Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QGN29_RS12430 Genome accession   NZ_CP123872
Coordinates   2751816..2752346 (-) Length   176 a.a.
NCBI ID   WP_310798192.1    Uniprot ID   -
Organism   Temperatibacter marinus strain NBRC 110045     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2746816..2757346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGN29_RS12400 (QGN29_12400) - 2748099..2748329 (-) 231 WP_310798186.1 acyl carrier protein -
  QGN29_RS12405 (QGN29_12405) fabG 2748551..2749291 (-) 741 WP_310798187.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QGN29_RS12410 (QGN29_12410) fabD 2749304..2750245 (-) 942 WP_310798188.1 ACP S-malonyltransferase -
  QGN29_RS12415 (QGN29_12415) rpsF 2750503..2750877 (+) 375 WP_310798189.1 30S ribosomal protein S6 -
  QGN29_RS12420 (QGN29_12420) rpsR 2750877..2751107 (+) 231 WP_310798190.1 30S ribosomal protein S18 -
  QGN29_RS12425 (QGN29_12425) rplI 2751122..2751742 (+) 621 WP_310798191.1 50S ribosomal protein L9 -
  QGN29_RS12430 (QGN29_12430) ssb 2751816..2752346 (-) 531 WP_310798192.1 single-stranded DNA-binding protein Machinery gene
  QGN29_RS12435 (QGN29_12435) - 2752532..2753710 (+) 1179 WP_310798193.1 hypothetical protein -
  QGN29_RS12440 (QGN29_12440) - 2753726..2754244 (+) 519 WP_310798194.1 hypothetical protein -
  QGN29_RS12445 (QGN29_12445) uvrA 2754408..2757269 (+) 2862 WP_310798195.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18643.23 Da        Isoelectric Point: 4.8334

>NTDB_id=822963 QGN29_RS12430 WP_310798192.1 2751816..2752346(-) (ssb) [Temperatibacter marinus strain NBRC 110045]
MAGSVNKVIIVGNLGRDPEVRTMGNGGKVVQLNIATSESWKDRNTGERKDKTEWHRVVIFNENLARVAEQYLRKGSTVYV
EGQLQTRKWTDNSGQEKYTTEIVLQRYRGELTMLGSRSGSGQGGGDFGGGYDDGGFGGGQGGGDFGGNQGGNQGGNQGGG
FGGDQSGGDLDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=822963 QGN29_RS12430 WP_310798192.1 2751816..2752346(-) (ssb) [Temperatibacter marinus strain NBRC 110045]
ATGGCAGGTTCTGTCAATAAGGTCATTATCGTTGGGAATCTTGGGCGAGATCCAGAAGTAAGAACTATGGGCAACGGCGG
TAAAGTTGTGCAATTGAATATTGCTACAAGTGAAAGCTGGAAAGATCGCAATACAGGCGAGAGAAAAGATAAAACAGAGT
GGCATAGAGTTGTGATTTTTAATGAAAATCTTGCCCGTGTTGCAGAACAATATTTACGTAAGGGCTCTACAGTATATGTT
GAAGGTCAACTTCAAACACGTAAATGGACAGACAATAGTGGGCAAGAAAAATATACAACTGAAATCGTATTGCAACGCTA
CCGCGGTGAATTGACAATGTTAGGCAGTCGCAGTGGCAGCGGTCAAGGCGGCGGTGACTTCGGCGGCGGCTATGATGATG
GCGGATTCGGTGGCGGCCAAGGTGGCGGTGACTTCGGCGGAAATCAGGGTGGAAACCAGGGTGGAAACCAGGGCGGTGGC
TTTGGTGGGGATCAGTCTGGTGGCGATTTGGATGATGAAATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.206

100

0.528
  ssb Vibrio cholerae strain A1552

49.714

99.432

0.494
  ssb Neisseria meningitidis MC58

37.43

100

0.381
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.381