Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   R6Y88_RS17900 Genome accession   NZ_CP137687
Coordinates   3541161..3541856 (+) Length   231 a.a.
NCBI ID   WP_015384272.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3536161..3546856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS17880 folC 3537092..3538384 (+) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  R6Y88_RS17885 comC 3538524..3539270 (+) 747 WP_015384274.1 A24 family peptidase Machinery gene
  R6Y88_RS17890 spoIIB 3539404..3540402 (+) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  R6Y88_RS17895 maf 3540555..3541124 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  R6Y88_RS17900 ysxA/radC 3541161..3541856 (+) 696 WP_015384272.1 DNA repair protein RadC Machinery gene
  R6Y88_RS17905 mreB 3541948..3542961 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  R6Y88_RS17910 mreC 3542992..3543864 (+) 873 WP_003222609.1 rod shape-determining protein MreC -
  R6Y88_RS17915 mreD 3543861..3544379 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  R6Y88_RS17920 minC 3544432..3545112 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  R6Y88_RS17925 minD 3545114..3545920 (+) 807 WP_004398624.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26142.47 Da        Isoelectric Point: 7.9285

>NTDB_id=822845 R6Y88_RS17900 WP_015384272.1 3541161..3541856(+) (ysxA/radC) [Bacillus subtilis strain YT-4]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=822845 R6Y88_RS17900 WP_015384272.1 3541161..3541856(+) (ysxA/radC) [Bacillus subtilis strain YT-4]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTTCTGAAAGTCGG
AGCCGAGAACTTAGCGAACCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGATGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCATATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATTTGTGTTCATAATCATCCTTCTGGAGATCC
GACACCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.134

100

0.991
  radC Streptococcus pneumoniae TIGR4

48.571

90.909

0.442
  radC Streptococcus pneumoniae R6

48.095

90.909

0.437
  radC Streptococcus pneumoniae D39

48.095

90.909

0.437
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429