Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QGV56_RS15820 Genome accession   NZ_CP123784
Coordinates   3364582..3365094 (-) Length   170 a.a.
NCBI ID   WP_281016718.1    Uniprot ID   -
Organism   Minwuia sp. IMCC4030     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3359582..3370094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGV56_RS15805 - 3360135..3361808 (-) 1674 WP_281016721.1 iron ABC transporter permease -
  QGV56_RS15810 - 3361877..3362854 (-) 978 WP_281016720.1 ABC transporter substrate-binding protein -
  QGV56_RS15815 leuC 3363034..3364437 (-) 1404 WP_281016719.1 3-isopropylmalate dehydratase large subunit -
  QGV56_RS15820 ssb 3364582..3365094 (-) 513 WP_281016718.1 single-stranded DNA-binding protein Machinery gene
  QGV56_RS15825 uvrA 3365381..3368293 (+) 2913 WP_281016717.1 excinuclease ABC subunit UvrA -
  QGV56_RS15830 - 3368319..3368720 (+) 402 WP_281016716.1 VOC family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18022.66 Da        Isoelectric Point: 5.3400

>NTDB_id=822718 QGV56_RS15820 WP_281016718.1 3364582..3365094(-) (ssb) [Minwuia sp. IMCC4030]
MAGSVNKVILVGNLGADPEVRRMPDGNPVVNLRIATSETWRDRNSGERRERTEWHRVVIFNENLAKVAEQYLRKGAKVFI
EGQIQTRKWTDQQGQDKYSTEIVLNRFRGDLQMLDSRGEGGGGGGSYGGGSGGGGGYGGGSGGGGSRGGNDRGGDDFGGG
GSDLDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=822718 QGV56_RS15820 WP_281016718.1 3364582..3365094(-) (ssb) [Minwuia sp. IMCC4030]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGGGCGGACCCGGAGGTGCGGCGGATGCCGGACGGCAA
TCCGGTGGTGAACCTGCGCATCGCGACCTCGGAGACCTGGCGCGACCGCAACAGCGGCGAACGCCGGGAGCGTACCGAGT
GGCACCGCGTCGTGATCTTCAACGAGAACCTGGCCAAGGTCGCCGAGCAGTACCTGCGCAAGGGTGCCAAGGTGTTCATC
GAAGGCCAGATCCAGACCCGCAAGTGGACCGACCAGCAGGGCCAGGACAAGTACAGCACCGAGATCGTGCTCAACCGCTT
CCGCGGCGACCTGCAGATGCTCGACAGCCGCGGTGAAGGTGGCGGCGGTGGCGGCAGCTATGGCGGCGGTTCCGGTGGGG
GCGGCGGCTACGGTGGTGGTTCCGGCGGCGGCGGCTCACGCGGCGGCAATGACCGTGGCGGCGACGATTTCGGTGGCGGC
GGCAGCGACCTGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.541
  ssb Vibrio cholerae strain A1552

47.977

100

0.488
  ssb Neisseria meningitidis MC58

39.665

100

0.418
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.418