Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QGV54_RS11390 Genome accession   NZ_CP123782
Coordinates   2419591..2420103 (-) Length   170 a.a.
NCBI ID   WP_281016718.1    Uniprot ID   -
Organism   Minwuia sp. IMCC3060     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2414591..2425103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGV54_RS11375 - 2415144..2416817 (-) 1674 WP_281016721.1 iron ABC transporter permease -
  QGV54_RS11380 - 2416886..2417863 (-) 978 WP_281016720.1 ABC transporter substrate-binding protein -
  QGV54_RS11385 leuC 2418043..2419446 (-) 1404 WP_281016719.1 3-isopropylmalate dehydratase large subunit -
  QGV54_RS11390 ssb 2419591..2420103 (-) 513 WP_281016718.1 single-stranded DNA-binding protein Machinery gene
  QGV54_RS11395 uvrA 2420390..2423302 (+) 2913 WP_281016717.1 excinuclease ABC subunit UvrA -
  QGV54_RS11400 - 2423385..2423729 (+) 345 WP_348638755.1 VOC family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18022.66 Da        Isoelectric Point: 5.3400

>NTDB_id=822696 QGV54_RS11390 WP_281016718.1 2419591..2420103(-) (ssb) [Minwuia sp. IMCC3060]
MAGSVNKVILVGNLGADPEVRRMPDGNPVVNLRIATSETWRDRNSGERRERTEWHRVVIFNENLAKVAEQYLRKGAKVFI
EGQIQTRKWTDQQGQDKYSTEIVLNRFRGDLQMLDSRGEGGGGGGSYGGGSGGGGGYGGGSGGGGSRGGNDRGGDDFGGG
GSDLDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=822696 QGV54_RS11390 WP_281016718.1 2419591..2420103(-) (ssb) [Minwuia sp. IMCC3060]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGGGCGGACCCGGAGGTGCGGCGGATGCCGGACGGCAA
TCCGGTGGTGAACCTGCGCATCGCGACCTCGGAGACCTGGCGCGACCGCAACAGCGGCGAACGCCGGGAGCGTACCGAGT
GGCACCGCGTCGTGATCTTCAACGAGAACCTGGCCAAGGTCGCCGAGCAGTACCTGCGCAAGGGTGCCAAGGTGTTCATC
GAAGGCCAGATCCAGACCCGCAAGTGGACCGACCAGCAGGGCCAGGACAAGTACAGCACCGAGATCGTGCTCAACCGCTT
CCGCGGCGACCTGCAGATGCTCGACAGCCGCGGTGAAGGTGGCGGCGGTGGCGGCAGCTATGGCGGCGGTTCCGGTGGGG
GCGGCGGCTACGGTGGTGGTTCCGGCGGCGGCGGCTCACGCGGCGGCAATGACCGTGGCGGCGACGATTTCGGTGGCGGC
GGCAGCGACCTGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.541
  ssb Vibrio cholerae strain A1552

47.977

100

0.488
  ssb Neisseria meningitidis MC58

39.665

100

0.418
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.418