Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   QFB56_RS18315 Genome accession   NZ_CP123765
Coordinates   3761297..3762430 (+) Length   377 a.a.
NCBI ID   WP_126117781.1    Uniprot ID   A0AAE9S8J2
Organism   Acinetobacter pittii strain AP8900     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3756297..3767430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS18290 (QFB56_18290) - 3756553..3756759 (-) 207 WP_005072046.1 hypothetical protein -
  QFB56_RS18295 (QFB56_18295) oprC 3756813..3758927 (-) 2115 WP_005072043.1 TonB-dependent copper receptor -
  QFB56_RS18300 (QFB56_18300) - 3759000..3759425 (-) 426 WP_032070742.1 DUF2946 family protein -
  QFB56_RS18305 (QFB56_18305) def 3759469..3759999 (-) 531 WP_002114101.1 peptide deformylase -
  QFB56_RS18310 (QFB56_18310) tsaP 3760122..3761276 (+) 1155 WP_032070741.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QFB56_RS18315 (QFB56_18315) dprA 3761297..3762430 (+) 1134 WP_126117781.1 DNA-processing protein DprA Machinery gene
  QFB56_RS18320 (QFB56_18320) yrdC 3762482..3763051 (+) 570 WP_005072030.1 Sua5/YciO/YrdC/YwlC family protein -
  QFB56_RS18325 (QFB56_18325) - 3763444..3764364 (-) 921 WP_002114137.1 DMT family transporter -
  QFB56_RS18330 (QFB56_18330) - 3764469..3765122 (-) 654 WP_080631244.1 TetR/AcrR family transcriptional regulator -
  QFB56_RS18335 (QFB56_18335) nepI 3765258..3766472 (+) 1215 WP_005072024.1 MFS transporter -
  QFB56_RS18340 (QFB56_18340) - 3766494..3767258 (+) 765 WP_005072018.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41864.32 Da        Isoelectric Point: 6.4551

>NTDB_id=822640 QFB56_RS18315 WP_126117781.1 3761297..3762430(+) (dprA) [Acinetobacter pittii strain AP8900]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQDAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=822640 QFB56_RS18315 WP_126117781.1 3761297..3762430(+) (dprA) [Acinetobacter pittii strain AP8900]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTATCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGCCAAGCTCAAGCTTTGTTGCAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGATGCTTATGATTTTGCCTACTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGC
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCGATTATTACTGAATTTTTGCCTGGAACAC
CCCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACA
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCTGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCTACTCAATGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAGTACTCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

91.247

100

0.912

  dprA Acinetobacter baumannii strain A118

90.716

100

0.907

  dprA Acinetobacter baylyi ADP1

71.129

100

0.719

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387