Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFB56_RS14225 Genome accession   NZ_CP123765
Coordinates   2911758..2912084 (-) Length   108 a.a.
NCBI ID   WP_002126519.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP8900     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2906758..2917084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS14215 (QFB56_14215) - 2908511..2908807 (+) 297 Protein_2777 malate:quinone oxidoreductase -
  QFB56_RS14220 (QFB56_14220) - 2908860..2909792 (-) 933 WP_004812228.1 IS5-like element ISAha3 family transposase -
  QFB56_RS14225 (QFB56_14225) ssb 2911758..2912084 (-) 327 WP_002126519.1 single-stranded DNA-binding protein Machinery gene
  QFB56_RS14230 (QFB56_14230) - 2912339..2914768 (-) 2430 WP_199953127.1 DUF927 domain-containing protein -
  QFB56_RS14235 (QFB56_14235) - 2914761..2915066 (-) 306 WP_199953128.1 hypothetical protein -
  QFB56_RS14240 (QFB56_14240) - 2915059..2915361 (-) 303 WP_109291425.1 hypothetical protein -
  QFB56_RS14245 (QFB56_14245) - 2915364..2915561 (-) 198 WP_109291423.1 hypothetical protein -
  QFB56_RS14250 (QFB56_14250) - 2915571..2915939 (-) 369 WP_199953129.1 hypothetical protein -
  QFB56_RS14255 (QFB56_14255) - 2915932..2916438 (-) 507 WP_140953943.1 BRO family protein -
  QFB56_RS14260 (QFB56_14260) - 2916435..2916653 (-) 219 WP_110958343.1 helix-turn-helix domain-containing protein -
  QFB56_RS14265 (QFB56_14265) - 2916657..2916872 (-) 216 WP_140953944.1 transcriptional regulator -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12234.94 Da        Isoelectric Point: 10.2394

>NTDB_id=822621 QFB56_RS14225 WP_002126519.1 2911758..2912084(-) (ssb) [Acinetobacter pittii strain AP8900]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=822621 QFB56_RS14225 WP_002126519.1 2911758..2912084(-) (ssb) [Acinetobacter pittii strain AP8900]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTACTAGGTCGTGACCCTGAAACTAAACAATTTCCCAACGGCGGAAG
CGTTACCACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACTACAGGTGAGCGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.887

98.148

0.509
  ssb Neisseria meningitidis MC58

51.887

98.148

0.509
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491