Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QG404_RS12320 Genome accession   NZ_CP123759
Coordinates   2515834..2516370 (-) Length   178 a.a.
NCBI ID   WP_280937780.1    Uniprot ID   -
Organism   Arsenophonus apicola strain aApi_AU     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2510834..2521370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG404_RS12300 (QG404_12305) - 2511088..2512776 (+) 1689 WP_280937776.1 hypothetical protein -
  QG404_RS12305 (QG404_12310) - 2512815..2513822 (-) 1008 WP_280937777.1 agmatine deiminase family protein -
  QG404_RS12310 (QG404_12315) - 2513973..2514569 (+) 597 WP_280937778.1 TetR/AcrR family transcriptional regulator -
  QG404_RS12315 (QG404_12320) - 2514643..2515167 (-) 525 WP_280937779.1 type III toxin-antitoxin system ToxN/AbiQ family toxin -
  QG404_RS12320 (QG404_12325) ssb 2515834..2516370 (-) 537 WP_280937780.1 single-stranded DNA-binding protein Machinery gene
  QG404_RS12325 (QG404_12330) uvrA 2516649..2519483 (+) 2835 WP_280937781.1 excinuclease ABC subunit UvrA -
  QG404_RS12330 (QG404_12335) - 2519989..2520474 (+) 486 WP_280937782.1 phenolic acid decarboxylase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19229.38 Da        Isoelectric Point: 5.2420

>NTDB_id=822536 QG404_RS12320 WP_280937780.1 2515834..2516370(-) (ssb) [Arsenophonus apicola strain aApi_AU]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQSGEMREKTEWHRVVIFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQNGQDRYSTEVVVNIGGTMQMLGARGGSPEAMSQNNPASGWGQPQQPPQTQQFSGNAPASAPAAHSGKT
APATPAEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=822536 QG404_RS12320 WP_280937780.1 2515834..2516370(-) (ssb) [Arsenophonus apicola strain aApi_AU]
ATGGCCAGCAGAGGCGTTAACAAAGTCATACTTATCGGCAACTTGGGACAAGATCCTGAAATTCGTTATATGCCAAATGG
TGGTGCGGTTGCGAATCTTACGCTGGCAACCTCTGAAAGTTGGCGTGATAAGCAAAGTGGCGAAATGCGGGAAAAAACAG
AATGGCACCGTGTTGTGATCTTTGGCAAGCTGGCGGAAGTGGCAGGTGAATATTTACGTAAAGGTTCACAAGTTTATATT
GAAGGCTCACTACAAACCCGTAAATGGCAAGATCAAAATGGCCAGGATCGCTACTCTACCGAAGTGGTGGTAAATATTGG
TGGAACCATGCAAATGTTAGGGGCGCGTGGTGGCTCACCAGAAGCCATGTCACAAAATAATCCAGCCAGTGGCTGGGGAC
AACCACAACAGCCACCACAAACTCAGCAGTTTAGTGGTAACGCACCAGCATCAGCGCCAGCCGCCCATTCCGGTAAAACC
GCTCCCGCGACACCGGCTGAACCACCGATGGATTTCGATGATGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.022

100

0.713
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.59
  ssb Neisseria meningitidis MC58

46.667

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.472