Detailed information NTG0822384

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: R6K63_RS27380
• Genome accession: NZ_CP137556
• Coordinates: 5777712..5778584 (+)
• Length: 290 a.a.
• NCBI ID: WP_003116251.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain CDC1270
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5772712..5783584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R6K63_RS27350	-	5772770..5773012 (+)	243	WP_023082027.1	hypothetical protein	-
R6K63_RS27360	-	5773255..5773953 (-)	699	WP_016254081.1	hypothetical protein	-
R6K63_RS27365	pilE	5774017..5774556 (-)	540	WP_031285592.1	pilin	Machinery gene
R6K63_RS27370	pilB	5774785..5776488 (+)	1704	WP_003116249.1	type IV-A pilus assembly ATPase PilB	Machinery gene
R6K63_RS27375	pilC	5776492..5777709 (+)	1218	WP_023435364.1	type II secretion system F family protein	Machinery gene
R6K63_RS27380	pilD	5777712..5778584 (+)	873	WP_003116251.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
R6K63_RS27385	coaE	5778581..5779192 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
R6K63_RS27390	yacG	5779189..5779389 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
R6K63_RS27395	-	5779426..5779635 (-)	210	WP_003094660.1	hypothetical protein	-
R6K63_RS27400	-	5779741..5780430 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
R6K63_RS27405	-	5780427..5780897 (-)	471	WP_003094664.1	hypothetical protein	-
R6K63_RS27410	-	5780894..5781319 (-)	426	WP_023435363.1	GNAT family N-acetyltransferase	-
R6K63_RS27415	-	5781452..5782081 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
R6K63_RS27420	-	5782078..5782527 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
R6K63_RS27425	-	5782553..5782723 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31871.89 Da
• Isoelectric Point: 7.3454

>NTDB_id=822384 R6K63_RS27380 WP_003116251.1 5777712..5778584(+) (pilD) [Pseudomonas aeruginosa strain CDC1270]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=822384 R6K63_RS27380 WP_003116251.1 5777712..5778584(+) (pilD) [Pseudomonas aeruginosa strain CDC1270]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.017	99.655	0.548
pilD	Vibrio campbellii strain DS40M4	53.497	98.621	0.528
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472