Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QFX45_RS06025 Genome accession   NZ_CP123747
Coordinates   1177378..1177875 (+) Length   165 a.a.
NCBI ID   WP_304984668.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1172378..1182875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX45_RS05985 - 1172422..1173408 (+) 987 WP_000161314.1 ROK family glucokinase -
  QFX45_RS05990 - 1173408..1173737 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QFX45_RS05995 - 1173734..1174357 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX45_RS06000 comGA 1174409..1175383 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX45_RS06005 comGB 1175355..1176425 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX45_RS06010 comGC 1176439..1176750 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX45_RS06015 comGD 1176728..1177174 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX45_RS06020 comGE 1177161..1177460 (+) 300 WP_304984667.1 competence protein ComGE Machinery gene
  QFX45_RS06025 comGF 1177378..1177875 (+) 498 WP_304984668.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX45_RS06030 - 1177972..1178118 (+) 147 WP_001789879.1 hypothetical protein -
  QFX45_RS06035 - 1178108..1178632 (+) 525 WP_001015117.1 shikimate kinase -
  QFX45_RS06040 gcvT 1178791..1179882 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX45_RS06045 gcvPA 1179902..1181248 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QFX45_RS06050 gcvPB 1181241..1182713 (+) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19178.95 Da        Isoelectric Point: 10.3044

>NTDB_id=822342 QFX45_RS06025 WP_304984668.1 1177378..1177875(+) (comGF) [Staphylococcus aureus strain 1.4]
MILSKVTNKFVLFQKIPLLIKRHIYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVKT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=822342 QFX45_RS06025 WP_304984668.1 1177378..1177875(+) (comGF) [Staphylococcus aureus strain 1.4]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATATATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGAAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

98.788

100

0.988
  comGF Staphylococcus aureus N315

95.152

100

0.952