Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   R6K63_RS10210 Genome accession   NZ_CP137556
Coordinates   2132603..2132932 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CDC1270     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2127603..2137932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6K63_RS10195 - 2127632..2128651 (+) 1020 WP_003113413.1 MraY family glycosyltransferase -
  R6K63_RS10200 - 2128729..2129850 (+) 1122 Protein_2025 IS3 family transposase -
  R6K63_RS10205 - 2130415..2132412 (+) 1998 WP_010895647.1 polysaccharide biosynthesis protein -
  R6K63_RS10210 comEA/comE1 2132603..2132932 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  R6K63_RS10220 - 2133149..2134345 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  R6K63_RS10225 uvrB 2134533..2136545 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=822338 R6K63_RS10210 WP_003091430.1 2132603..2132932(+) (comEA/comE1) [Pseudomonas aeruginosa strain CDC1270]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=822338 R6K63_RS10210 WP_003091430.1 2132603..2132932(+) (comEA/comE1) [Pseudomonas aeruginosa strain CDC1270]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385