Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QFH15_RS07430 Genome accession   NZ_CP123618
Coordinates   1486508..1486942 (-) Length   144 a.a.
NCBI ID   WP_061406215.1    Uniprot ID   Q9LA12
Organism   Pasteurella multocida strain 19BRD-057     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481508..1491942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFH15_RS07400 (QFH15_07400) - 1482072..1482341 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  QFH15_RS07405 (QFH15_07405) yacG 1482341..1482544 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  QFH15_RS07410 (QFH15_07410) coaE 1482555..1483175 (-) 621 WP_005753357.1 dephospho-CoA kinase -
  QFH15_RS07415 (QFH15_07415) - 1483190..1483912 (-) 723 WP_223131886.1 A24 family peptidase -
  QFH15_RS07420 (QFH15_07420) - 1483912..1485123 (-) 1212 WP_223131887.1 type II secretion system F family protein -
  QFH15_RS07425 (QFH15_07425) pilB 1485123..1486508 (-) 1386 WP_223131888.1 GspE/PulE family protein Machinery gene
  QFH15_RS07430 (QFH15_07430) pilA 1486508..1486942 (-) 435 WP_061406215.1 prepilin peptidase-dependent pilin Machinery gene
  QFH15_RS07435 (QFH15_07435) ampD 1487102..1487668 (+) 567 WP_014668228.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QFH15_RS07440 (QFH15_07440) rppH 1488254..1488850 (+) 597 WP_014668229.1 RNA pyrophosphohydrolase -
  QFH15_RS07445 (QFH15_07445) - 1488853..1489647 (+) 795 WP_005719128.1 sulfite exporter TauE/SafE family protein -
  QFH15_RS07450 (QFH15_07450) lgt 1489657..1490460 (+) 804 WP_014668230.1 prolipoprotein diacylglyceryl transferase -
  QFH15_RS07455 (QFH15_07455) - 1490466..1491317 (+) 852 WP_223131889.1 thymidylate synthase -
  QFH15_RS07460 (QFH15_07460) tadA 1491344..1491832 (+) 489 WP_223131890.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15213.68 Da        Isoelectric Point: 9.1215

>NTDB_id=821691 QFH15_RS07430 WP_061406215.1 1486508..1486942(-) (pilA) [Pasteurella multocida strain 19BRD-057]
MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNTPSECSAGQHGIR
ANISSGKKYLSSINVKSGVITVIGQKSLEGVNYTLSATGNAVDGVSWSVKCNGGSEVFPAGFCA

Nucleotide


Download         Length: 435 bp        

>NTDB_id=821691 QFH15_RS07430 WP_061406215.1 1486508..1486942(-) (pilA) [Pasteurella multocida strain 19BRD-057]
ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT
TTTAGCTACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCAGCTC
CTTATCGTGCTGAGGTAGAGCTTTGTATCTATAATACAAATACGCCCAGTGAATGTAGTGCAGGACAGCATGGTATTAGA
GCAAATATAAGTTCTGGTAAAAAATATCTCAGCTCAATCAATGTCAAGTCTGGCGTGATTACTGTCATTGGTCAAAAAAG
CTTAGAGGGAGTCAATTACACTTTAAGCGCGACAGGAAATGCCGTTGATGGTGTTTCATGGAGTGTAAAATGTAATGGTG
GTAGTGAAGTTTTCCCAGCAGGATTTTGTGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9LA12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

59.028

100

0.59
  pilA Haemophilus influenzae Rd KW20

59.028

100

0.59
  pilA Glaesserella parasuis strain SC1401

53.02

100

0.549
  comP Acinetobacter baylyi ADP1

37.681

95.833

0.361