Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R5016_RS25975 Genome accession   NZ_CP137507
Coordinates   5581350..5581847 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain HPA0698     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5576350..5586847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5016_RS25960 (R5016_25960) bfr 5576358..5576822 (+) 465 WP_003093668.1 bacterioferritin -
  R5016_RS25965 (R5016_25965) uvrA 5576894..5579731 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  R5016_RS25970 (R5016_25970) - 5579945..5581333 (+) 1389 WP_003103910.1 MFS transporter -
  R5016_RS25975 (R5016_25975) ssb 5581350..5581847 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  R5016_RS25980 (R5016_25980) pchA 5581936..5583366 (-) 1431 WP_003093658.1 isochorismate synthase PchA -
  R5016_RS25985 (R5016_25985) pchB 5583363..5583668 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  R5016_RS25990 (R5016_25990) pchC 5583668..5584423 (-) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -
  R5016_RS25995 (R5016_25995) pchD 5584420..5586063 (-) 1644 WP_003093650.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=821614 R5016_RS25975 WP_003114685.1 5581350..5581847(+) (ssb) [Pseudomonas aeruginosa strain HPA0698]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=821614 R5016_RS25975 WP_003114685.1 5581350..5581847(+) (ssb) [Pseudomonas aeruginosa strain HPA0698]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515