Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QEZ52_RS11230 Genome accession   NZ_CP123584
Coordinates   2376133..2376675 (-) Length   180 a.a.
NCBI ID   WP_406644442.1    Uniprot ID   -
Organism   Aliisedimentitalea scapharcae strain KCTC 42119     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2371133..2381675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEZ52_RS11210 (QEZ52_11210) - 2371321..2372391 (-) 1071 WP_406644438.1 site-2 protease family protein -
  QEZ52_RS11215 (QEZ52_11215) - 2372541..2373677 (-) 1137 WP_406644439.1 acyl-CoA dehydrogenase family protein -
  QEZ52_RS11220 (QEZ52_11220) - 2373674..2374843 (-) 1170 WP_406644440.1 CaiB/BaiF CoA transferase family protein -
  QEZ52_RS11225 (QEZ52_11225) - 2374924..2375817 (+) 894 WP_406644441.1 LysR family transcriptional regulator -
  QEZ52_RS11230 (QEZ52_11230) ssb 2376133..2376675 (-) 543 WP_406644442.1 single-stranded DNA-binding protein Machinery gene
  QEZ52_RS11235 (QEZ52_11235) - 2376902..2377486 (+) 585 WP_406644443.1 lytic transglycosylase domain-containing protein -
  QEZ52_RS11240 (QEZ52_11240) - 2377595..2378740 (+) 1146 WP_406644444.1 cytochrome-c peroxidase -
  QEZ52_RS11245 (QEZ52_11245) - 2378835..2379788 (+) 954 WP_406644445.1 LuxR C-terminal-related transcriptional regulator -
  QEZ52_RS11250 (QEZ52_11250) - 2379918..2380904 (+) 987 WP_406644446.1 MBL fold metallo-hydrolase -
  QEZ52_RS11255 (QEZ52_11255) - 2381024..2381554 (+) 531 WP_406644447.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19205.84 Da        Isoelectric Point: 5.3232

>NTDB_id=821400 QEZ52_RS11230 WP_406644442.1 2376133..2376675(-) (ssb) [Aliisedimentitalea scapharcae strain KCTC 42119]
MAGSVNKVIIVGNLGRDPEVRSFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFSEPLARIAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRGELTLLDGRGGDQSGGGGYGGGQGGGQGDSYGGGDSGGYGAPQGDPYGGGGQ
QSAPARGGPAHNIDDDEIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=821400 QEZ52_RS11230 WP_406644442.1 2376133..2376675(-) (ssb) [Aliisedimentitalea scapharcae strain KCTC 42119]
ATGGCCGGCTCAGTTAACAAAGTCATCATCGTGGGCAATCTGGGGCGTGACCCGGAAGTGCGCAGTTTCCAGAACGGCGG
CAAAGTCTGCAACCTGCGTATTGCCACGTCAGAAAACTGGAAAGATCGCAACACCGGCGAACGGCGCGAACGGACCGAAT
GGCATTCAGTCGCAATTTTTTCCGAGCCGCTGGCCCGGATTGCTGAACAATACCTGCGCAAAGGGTCCAAGGTCTATATC
GAAGGTCAGTTGGAAACCCGCAAGTGGCAGGATCAATCCGGTCAGGACCGCTATTCTACCGAAGTCGTTCTGCGCCCCTA
CCGGGGTGAGCTGACCCTTCTGGACGGCCGTGGTGGTGACCAGAGCGGCGGTGGTGGTTATGGCGGCGGTCAGGGCGGCG
GTCAGGGCGACAGCTATGGCGGAGGCGATAGCGGCGGTTACGGCGCACCCCAGGGTGATCCTTATGGCGGCGGTGGCCAG
CAAAGCGCCCCGGCGCGTGGCGGCCCGGCCCATAACATCGACGATGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.521

100

0.539
  ssb Vibrio cholerae strain A1552

52.247

98.889

0.517
  ssb Neisseria meningitidis MC58

43.716

100

0.444
  ssb Neisseria gonorrhoeae MS11

42.857

100

0.433