Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFC96_RS00040 Genome accession   NZ_CP123581
Coordinates   9503..10015 (+) Length   170 a.a.
NCBI ID   WP_283534196.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain ZHA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4503..15015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFC96_RS00030 (QFC96_00030) gyrA 6339..8924 (+) 2586 WP_283534195.1 DNA gyrase subunit A -
  QFC96_RS00035 (QFC96_00035) rpsF 9167..9463 (+) 297 WP_004265809.1 30S ribosomal protein S6 -
  QFC96_RS00040 (QFC96_00040) ssb 9503..10015 (+) 513 WP_283534196.1 single-stranded DNA-binding protein Machinery gene
  QFC96_RS00045 (QFC96_00045) rpsR 10046..10285 (+) 240 WP_004265822.1 30S ribosomal protein S18 -
  QFC96_RS00050 (QFC96_00050) - 10502..12532 (+) 2031 WP_004265804.1 DHH family phosphoesterase -
  QFC96_RS00055 (QFC96_00055) rplI 12554..13006 (+) 453 WP_004265788.1 50S ribosomal protein L9 -
  QFC96_RS00060 (QFC96_00060) dnaB 13151..14554 (+) 1404 WP_172821848.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18651.19 Da        Isoelectric Point: 4.6856

>NTDB_id=821360 QFC96_RS00040 WP_283534196.1 9503..10015(+) (ssb) [Latilactobacillus curvatus strain ZHA1]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNTNGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=821360 QFC96_RS00040 WP_283534196.1 9503..10015(+) (ssb) [Latilactobacillus curvatus strain ZHA1]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATACCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

96.471

100

0.965
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

62.353

0.365
  ssb Glaesserella parasuis strain SC1401

33.155

100

0.365