Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QE197_RS16690 Genome accession   NZ_CP123544
Coordinates   3220544..3221080 (-) Length   178 a.a.
NCBI ID   WP_026822913.1    Uniprot ID   A0A4P7L5A7
Organism   Arsenophonus nasoniae strain aNv_CH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3215544..3226080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE197_RS16660 (QE197_16665) - 3215738..3215901 (-) 164 Protein_3243 IS6 family transposase -
  QE197_RS16665 (QE197_16670) - 3216426..3216995 (+) 570 WP_026822915.1 M10 family metallopeptidase C-terminal domain-containing protein -
  QE197_RS16670 (QE197_16675) - 3217127..3217555 (+) 429 Protein_3245 DDE-type integrase/transposase/recombinase -
  QE197_RS16675 (QE197_16680) - 3217659..3218068 (-) 410 Protein_3246 recombinase family protein -
  QE197_RS16680 (QE197_16685) - 3218530..3219075 (-) 546 Protein_3247 type III toxin-antitoxin system ToxN/AbiQ family toxin -
  QE197_RS16685 (QE197_16690) - 3219598..3220278 (+) 681 WP_026822914.1 hypothetical protein -
  QE197_RS16690 (QE197_16695) ssb 3220544..3221080 (-) 537 WP_026822913.1 single-stranded DNA-binding protein Machinery gene
  QE197_RS16695 (QE197_16700) uvrA 3221359..3224193 (+) 2835 WP_026822912.1 excinuclease ABC subunit UvrA -
  QE197_RS16700 (QE197_16705) - 3224700..3225185 (+) 486 WP_026822911.1 phenolic acid decarboxylase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19260.39 Da        Isoelectric Point: 5.2420

>NTDB_id=821269 QE197_RS16690 WP_026822913.1 3220544..3221080(-) (ssb) [Arsenophonus nasoniae strain aNv_CH]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQSGEMREKTEWHRVVIFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGARGGSQEGMPQNNPASGWGQPQQPQQTQQFSGNAPASAPAAHSGKT
APATPAEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=821269 QE197_RS16690 WP_026822913.1 3220544..3221080(-) (ssb) [Arsenophonus nasoniae strain aNv_CH]
ATGGCCAGCAGAGGCGTTAACAAAGTCATACTTATCGGCAACTTGGGACAAGATCCTGAAATTCGTTATATGCCAAATGG
TGGTGCGGTTGCGAATCTTACGCTGGCCACCTCTGAAAGTTGGCGTGATAAGCAAAGTGGTGAAATGCGCGAAAAAACAG
AATGGCACCGTGTTGTGATCTTTGGCAAGCTGGCTGAAGTGGCAGGTGAATATTTGCGTAAAGGTTCACAAGTTTATATT
GAAGGCTCACTACAAACCCGTAAATGGCAAGATCAAAGTGGCCAGGATCGCTACTCAACTGAAGTGGTAGTAAATATTGG
TGGTACCATGCAAATGTTAGGCGCGCGTGGCGGCTCACAGGAGGGTATGCCACAAAATAATCCAGCCAGTGGCTGGGGAC
AACCACAACAGCCACAACAAACTCAGCAGTTTAGTGGTAACGCACCAGCATCAGCGCCAGCCGCCCATTCCGGTAAAACC
GCTCCCGCGACACCGGCTGAGCCACCCATGGATTTCGATGATGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7L5A7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.73

100

0.725
  ssb Glaesserella parasuis strain SC1401

56.383

100

0.596
  ssb Neisseria meningitidis MC58

47.514

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.483