Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilR   Type   Regulator
Locus tag   QAO71_RS04595 Genome accession   NZ_CP123445
Coordinates   953948..955288 (-) Length   446 a.a.
NCBI ID   WP_235818283.1    Uniprot ID   -
Organism   Halopseudomonas sp. SMJS2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 948948..960288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO71_RS04580 (QAO71_04580) - 950307..951053 (+) 747 WP_280165377.1 transporter substrate-binding domain-containing protein -
  QAO71_RS04585 (QAO71_04585) mqo 951112..952599 (-) 1488 WP_280165378.1 malate dehydrogenase (quinone) -
  QAO71_RS04590 (QAO71_04590) thiO 952749..953855 (+) 1107 WP_280165379.1 glycine oxidase ThiO -
  QAO71_RS04595 (QAO71_04595) pilR 953948..955288 (-) 1341 WP_235818283.1 sigma-54 dependent transcriptional regulator Regulator
  QAO71_RS04600 (QAO71_04600) pilS 955326..956918 (-) 1593 WP_036990733.1 ATP-binding protein Regulator
  QAO71_RS04605 (QAO71_04605) - 956899..957129 (-) 231 WP_280165380.1 PP0621 family protein -
  QAO71_RS04610 (QAO71_04610) - 957391..958395 (-) 1005 WP_036991184.1 outer membrane protein assembly factor BamD -
  QAO71_RS04615 (QAO71_04615) rluD 958567..959526 (+) 960 WP_136869229.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QAO71_RS04620 (QAO71_04620) pgeF 959523..960260 (+) 738 WP_280165381.1 peptidoglycan editing factor PgeF -

Sequence


Protein


Download         Length: 446 a.a.        Molecular weight: 49578.88 Da        Isoelectric Point: 5.5372

>NTDB_id=821128 QAO71_RS04595 WP_235818283.1 953948..955288(-) (pilR) [Halopseudomonas sp. SMJS2]
MNNPLALIIDDEPDILELLDMTLGRMNISTRSATSLGQALELLNQQHFDLCLTDMRLPDGDGLSVVRHIQQHCPNTPVAM
ITAYGSLDTAITALKSGAFDFVTKPVDLQRLRELVNGALRLNQRQEAPLIEESDDPIQGSSPPIQQLRRQIAKLARSEAP
LYISGESGSGKELVARRIHALGPRACHPFVPVNCGAIPSELMESEFFGHRKGSFTGAVADKPGLFQAASGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRPVGTQQEQPVNVRLLCATHKDLAVEVAEGRFRQDLFYRINVIELCVPPLRERREDIAPMAR
RILTQLAQRAGVEVPHIDPACMERLSNYRFPGNVRELENILERAFTLCEGDTIMASDIQLNASPLPGEDSALRQIDSLED
FLDDIERKALTQALEETRWNKTAAARRLGLTFRSMRYRLKKLGLED

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=821128 QAO71_RS04595 WP_235818283.1 953948..955288(-) (pilR) [Halopseudomonas sp. SMJS2]
GTGAACAATCCGCTGGCACTGATCATCGATGACGAGCCCGATATCCTGGAGCTGCTCGACATGACTCTGGGGCGGATGAA
CATCAGTACCCGCAGCGCGACCAGCCTCGGCCAGGCGCTGGAGCTGCTCAATCAGCAGCACTTCGACTTGTGCCTGACCG
ACATGCGCCTGCCTGATGGCGATGGCTTGAGTGTGGTGCGACATATTCAGCAACATTGCCCAAACACCCCGGTGGCGATG
ATTACCGCCTATGGCAGCCTGGATACCGCCATCACTGCGCTCAAATCCGGCGCCTTCGATTTCGTTACCAAGCCCGTCGA
CTTGCAGCGGCTGCGCGAACTGGTCAACGGTGCCCTACGGCTGAACCAGCGCCAGGAAGCCCCACTGATTGAAGAGAGCG
ACGATCCGATTCAGGGCAGCTCACCGCCAATCCAGCAATTGCGTCGACAGATCGCCAAGCTCGCCCGCAGCGAGGCACCG
CTCTATATCAGTGGTGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGGCGCATCCACGCGCTGGGGCCTCGGGCCTGTCA
TCCCTTCGTGCCGGTGAACTGCGGGGCGATACCTTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCAGCT
TCACCGGCGCCGTGGCTGACAAGCCCGGCCTGTTCCAGGCGGCCAGTGGCGGCACCCTGTTTCTCGATGAGGTGGCCGAT
CTGCCGTTGGCGATGCAGGTCAAGCTGCTGCGGGCGATTCAGGAAAAGGCGGTGCGTCCGGTCGGCACCCAGCAGGAGCA
GCCAGTGAACGTGCGGCTGCTATGCGCGACCCACAAGGACCTGGCGGTGGAAGTGGCCGAAGGGCGATTTCGCCAGGACC
TGTTCTATCGGATCAATGTGATCGAGCTCTGCGTACCACCGCTGCGCGAGCGCCGTGAGGATATCGCACCGATGGCCCGG
CGCATTCTTACCCAACTGGCCCAGCGCGCGGGCGTCGAGGTGCCCCATATAGACCCGGCGTGCATGGAGCGGTTGAGCAA
CTACCGCTTCCCCGGCAACGTGCGCGAGCTGGAGAATATTCTGGAGCGGGCCTTCACCCTGTGTGAAGGCGATACCATCA
TGGCCAGCGATATCCAGCTTAACGCCAGCCCGCTTCCCGGCGAGGACTCCGCGCTGCGCCAGATCGATTCGCTGGAAGAC
TTTCTCGATGATATCGAACGCAAGGCATTGACCCAGGCGCTGGAGGAAACCCGCTGGAACAAGACCGCAGCCGCCCGCCG
CCTGGGCCTGACGTTTCGGTCAATGCGCTATCGATTGAAGAAACTGGGACTGGAAGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

69.933

100

0.704

  pilR Acinetobacter baumannii strain A118

49.784

100

0.518

  luxO Vibrio cholerae strain A1552

37.472

100

0.379