Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QAO71_RS04600 Genome accession   NZ_CP123445
Coordinates   955326..956918 (-) Length   530 a.a.
NCBI ID   WP_036990733.1    Uniprot ID   A0A031MF35
Organism   Halopseudomonas sp. SMJS2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 950326..961918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO71_RS04585 (QAO71_04585) mqo 951112..952599 (-) 1488 WP_280165378.1 malate dehydrogenase (quinone) -
  QAO71_RS04590 (QAO71_04590) thiO 952749..953855 (+) 1107 WP_280165379.1 glycine oxidase ThiO -
  QAO71_RS04595 (QAO71_04595) pilR 953948..955288 (-) 1341 WP_235818283.1 sigma-54 dependent transcriptional regulator Regulator
  QAO71_RS04600 (QAO71_04600) pilS 955326..956918 (-) 1593 WP_036990733.1 ATP-binding protein Regulator
  QAO71_RS04605 (QAO71_04605) - 956899..957129 (-) 231 WP_280165380.1 PP0621 family protein -
  QAO71_RS04610 (QAO71_04610) - 957391..958395 (-) 1005 WP_036991184.1 outer membrane protein assembly factor BamD -
  QAO71_RS04615 (QAO71_04615) rluD 958567..959526 (+) 960 WP_136869229.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QAO71_RS04620 (QAO71_04620) pgeF 959523..960260 (+) 738 WP_280165381.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59425.85 Da        Isoelectric Point: 6.9650

>NTDB_id=821129 QAO71_RS04600 WP_036990733.1 955326..956918(-) (pilS) [Halopseudomonas sp. SMJS2]
MWTSSTDTVDSQRPKILRIYNIYRVVLGLFLTLLTSSALRDGLIDLQNPDLYESASWIYLIINVLIALLLHQGKRDLHLF
VLAFIDIFLLAVLFYAAGGASSGLGNLLIIPVATGNILLHGRIGLLLAALASLALIYLTFFLSLAHPSISQSYLQVGVLG
CIYFAVALFVQRLSRRLRLSENLAQQQAASLASLEKLNQLIIQRMRTGIMVIDESLQVLLANEAAAQMLGKPIIRGMALD
SLAPELGQRQRQWQVNPSIRALPFRNHPGGAELMANFKRLPADERESILVFLDDNALMAQQVQQLKLASLGRLTASIAHE
IRNPLGALSHAAQLLIESEHIHDQDRRLTEIIQQHSKRMNKVIETVLELSRRRQSEPQLVDLTLWVAQFIRDYKQTSPAT
DTIECELEKEGILTRMDPNQLRQVLSNLCQNAFRYSGEPGSERTIWLKLYEDAGTGLPTLEIIDHGPGIDDRHLSQVFEP
FYTTESAGTGLGLYISRELCESNQATLEYERLEPRGSCMRIVFAHPRRLV

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=821129 QAO71_RS04600 WP_036990733.1 955326..956918(-) (pilS) [Halopseudomonas sp. SMJS2]
ATGTGGACCAGCAGTACTGATACGGTTGACTCCCAACGCCCGAAAATATTGCGCATCTACAATATCTATCGGGTGGTGCT
TGGACTTTTCCTGACGCTGCTGACCAGCTCTGCCCTGCGCGACGGGCTGATCGACCTGCAGAACCCCGATCTTTACGAAA
GCGCCAGCTGGATCTATCTGATCATCAACGTGTTGATCGCCCTGCTGCTGCATCAGGGCAAGCGCGACCTGCATCTGTTC
GTGCTGGCGTTCATCGATATCTTCCTGCTGGCGGTGTTGTTCTACGCGGCCGGTGGCGCCAGCAGCGGGCTGGGCAACCT
GCTGATCATCCCGGTGGCCACCGGCAATATTCTGCTGCACGGGCGCATTGGCCTGCTGCTGGCGGCGCTGGCCAGTCTGG
CGTTGATCTATCTGACATTCTTCCTGAGCCTCGCGCACCCGTCGATCAGTCAAAGCTACCTGCAGGTGGGTGTGCTGGGC
TGCATCTATTTTGCGGTAGCGCTATTTGTGCAGCGCCTCAGCCGCCGCCTGCGGCTCTCGGAAAACCTGGCCCAGCAGCA
GGCAGCCAGCCTGGCCAGCCTGGAAAAGCTCAACCAGTTGATCATCCAGCGCATGCGCACCGGCATCATGGTGATCGATG
AATCGCTGCAGGTACTGCTGGCCAATGAAGCCGCCGCCCAAATGCTGGGCAAGCCGATCATCCGTGGCATGGCCCTCGAT
AGCCTCGCCCCGGAACTGGGCCAGCGCCAGCGCCAATGGCAGGTCAATCCATCGATCCGTGCTCTGCCCTTTCGCAACCA
TCCCGGCGGCGCAGAGTTGATGGCCAATTTCAAGCGCCTGCCCGCCGATGAGCGGGAGTCGATCCTGGTCTTCCTCGACG
ATAATGCGCTGATGGCCCAGCAGGTCCAACAACTCAAACTGGCCTCCCTGGGCCGACTCACAGCGAGCATCGCCCATGAG
ATCCGCAACCCGCTGGGCGCCCTCAGCCACGCTGCGCAGTTGCTGATCGAGTCGGAGCACATCCACGACCAGGACCGACG
CCTGACCGAGATCATCCAACAGCACTCCAAGCGCATGAACAAGGTCATCGAAACCGTCCTCGAGCTATCCCGGCGGCGCC
AGAGCGAACCACAACTGGTCGATCTGACACTCTGGGTAGCGCAGTTCATCCGAGACTACAAGCAGACCAGCCCGGCCACT
GATACCATCGAATGCGAACTGGAGAAGGAAGGCATCCTGACCCGCATGGACCCCAATCAGCTGCGCCAGGTGCTGAGCAA
TCTGTGCCAGAATGCCTTCCGTTACAGTGGCGAGCCGGGCAGCGAGCGCACCATCTGGCTGAAGCTGTATGAAGATGCCG
GGACCGGCCTGCCTACCCTGGAGATCATCGACCATGGACCGGGCATCGATGATCGCCATCTGAGTCAGGTATTCGAACCG
TTCTACACTACCGAGTCCGCCGGTACCGGTCTGGGCCTGTATATCTCCCGCGAGCTATGCGAGAGCAACCAGGCAACCCT
GGAGTATGAGCGGCTGGAGCCGCGCGGCAGCTGCATGCGCATCGTCTTCGCCCACCCCAGACGGCTGGTATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(201-239)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031MF35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

51.538

98.113

0.506