Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QAO71_RS01510 Genome accession   NZ_CP123445
Coordinates   310440..310937 (+) Length   165 a.a.
NCBI ID   WP_036993666.1    Uniprot ID   -
Organism   Halopseudomonas sp. SMJS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 305440..315937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO71_RS01500 (QAO71_01500) uvrA 306003..308840 (-) 2838 WP_280165075.1 excinuclease ABC subunit UvrA -
  QAO71_RS01505 (QAO71_01505) - 309041..310411 (+) 1371 WP_074781297.1 MFS transporter -
  QAO71_RS01510 (QAO71_01510) ssb 310440..310937 (+) 498 WP_036993666.1 single-stranded DNA-binding protein Machinery gene
  QAO71_RS01515 (QAO71_01515) - 311025..312410 (-) 1386 WP_280165076.1 NAD(P)/FAD-dependent oxidoreductase -
  QAO71_RS01520 (QAO71_01520) - 312838..313515 (+) 678 WP_074781295.1 histidine phosphatase family protein -
  QAO71_RS01525 (QAO71_01525) - 313642..314523 (+) 882 WP_280165077.1 sugar nucleotide-binding protein -
  QAO71_RS01530 (QAO71_01530) - 314581..315291 (-) 711 WP_280165078.1 OmpW family outer membrane protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18620.78 Da        Isoelectric Point: 5.9431

>NTDB_id=821125 QAO71_RS01510 WP_036993666.1 310440..310937(+) (ssb) [Halopseudomonas sp. SMJS2]
MARGVNKVILIGNVGGDPEVRYLPNGNAVANVTLATSDSWKDKQTGQQQERTEWHRVVFFGRLAEIVGEYVRKGSKLYIE
GRLQTREWEKDGVKRYTTEIVVDIGGQMQLLDGRPQGGEGMAPRPQQSRPAPQRQAQQPQQQQQPAQPQAQQMPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=821125 QAO71_RS01510 WP_036993666.1 310440..310937(+) (ssb) [Halopseudomonas sp. SMJS2]
ATGGCCAGAGGCGTAAACAAAGTAATTCTGATCGGTAACGTGGGCGGCGACCCCGAAGTGCGCTACCTGCCCAACGGCAA
TGCGGTGGCCAACGTCACCCTGGCTACCTCCGACAGCTGGAAGGACAAACAGACCGGTCAGCAACAGGAGCGGACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAAATCGTCGGTGAGTACGTGCGCAAGGGCTCCAAGCTCTATATCGAA
GGCCGCCTGCAGACCCGCGAGTGGGAAAAGGACGGCGTCAAGCGTTACACCACTGAAATCGTGGTCGATATCGGCGGACA
GATGCAGTTGCTCGACGGCCGTCCCCAGGGCGGCGAAGGCATGGCGCCACGCCCGCAGCAGTCGCGCCCGGCCCCCCAGC
GTCAGGCCCAGCAACCGCAGCAACAGCAGCAACCGGCCCAGCCGCAGGCGCAGCAGATGCCGGATTACGACAGCTTCGAT
GACGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.818

100

0.606
  ssb Glaesserella parasuis strain SC1401

46.739

100

0.521
  ssb Neisseria meningitidis MC58

45.763

100

0.491
  ssb Neisseria gonorrhoeae MS11

45.763

100

0.491