Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R5028_RS18620 Genome accession   NZ_CP137486
Coordinates   3980183..3980680 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain HPA2660     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3975183..3985680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5028_RS18600 (R5028_18600) pchD 3975967..3977610 (+) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  R5028_RS18605 (R5028_18605) pchC 3977607..3978362 (+) 756 WP_010793475.1 pyochelin biosynthesis editing thioesterase PchC -
  R5028_RS18610 (R5028_18610) pchB 3978362..3978667 (+) 306 WP_010793476.1 isochorismate lyase PchB -
  R5028_RS18615 (R5028_18615) pchA 3978664..3980094 (+) 1431 WP_034069435.1 isochorismate synthase PchA -
  R5028_RS18620 (R5028_18620) ssb 3980183..3980680 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  R5028_RS18625 (R5028_18625) - 3980697..3982085 (-) 1389 WP_034069436.1 MFS transporter -
  R5028_RS18630 (R5028_18630) uvrA 3982299..3985136 (+) 2838 WP_034069437.1 excinuclease ABC subunit UvrA Machinery gene
  R5028_RS18635 (R5028_18635) bfr 3985208..3985672 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=820568 R5028_RS18620 WP_003114685.1 3980183..3980680(-) (ssb) [Pseudomonas aeruginosa strain HPA2660]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=820568 R5028_RS18620 WP_003114685.1 3980183..3980680(-) (ssb) [Pseudomonas aeruginosa strain HPA2660]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515