Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QEG98_RS06080 Genome accession   NZ_CP123278
Coordinates   1277225..1277722 (+) Length   165 a.a.
NCBI ID   WP_090485051.1    Uniprot ID   A0AA97B311
Organism   Myxococcus sp. MxC21-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1272225..1282722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEG98_RS06050 (QEG98_06145) - 1272789..1273250 (+) 462 WP_090485059.1 PTS sugar transporter subunit IIA -
  QEG98_RS41700 - 1273284..1274124 (+) 841 Protein_1195 hypothetical protein -
  QEG98_RS06070 (QEG98_06165) dtd 1274121..1274582 (-) 462 WP_316566064.1 D-aminoacyl-tRNA deacylase -
  QEG98_RS06075 (QEG98_06170) dacB 1274768..1277014 (+) 2247 WP_316566065.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  QEG98_RS06080 (QEG98_06175) ssb 1277225..1277722 (+) 498 WP_090485051.1 single-stranded DNA-binding protein Machinery gene
  QEG98_RS06085 - 1277853..1278524 (-) 672 Protein_1199 succinate dehydrogenase -
  QEG98_RS06090 (QEG98_06190) - 1278787..1279671 (+) 885 WP_316566066.1 Hsp33 family molecular chaperone HslO -
  QEG98_RS06095 (QEG98_06195) - 1279706..1280737 (+) 1032 WP_316566067.1 Leu/Phe/Val dehydrogenase -
  QEG98_RS06100 (QEG98_06200) - 1280800..1281543 (+) 744 WP_316566068.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17598.33 Da        Isoelectric Point: 5.7963

>NTDB_id=820326 QEG98_RS06080 WP_090485051.1 1277225..1277722(+) (ssb) [Myxococcus sp. MxC21-1]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGRRQFSQPRGGDNNDYGQPPPDDMGGGHGGGNGD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=820326 QEG98_RS06080 WP_090485051.1 1277225..1277722(+) (ssb) [Myxococcus sp. MxC21-1]
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGTGGCCGTGACGCCGGAGACGGCATGGGCGGCGGGGGCGGGGGCGGTGGCCGCCGGCAGTTCTCCCAGC
CACGAGGGGGAGACAACAACGACTACGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGCAACGGCGAC
GACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.352

100

0.533
  ssb Glaesserella parasuis strain SC1401

41.989

100

0.461
  ssb Neisseria gonorrhoeae MS11

41.243

100

0.442
  ssb Neisseria meningitidis MC58

41.618

100

0.436