Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | N4838_RS05560 | Genome accession | NZ_CP123251 |
| Coordinates | 1280785..1281348 (-) | Length | 187 a.a. |
| NCBI ID | WP_262960514.1 | Uniprot ID | - |
| Organism | Providencia rettgeri strain YZLc5-3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1276098..1317135 | 1280785..1281348 | within | 0 |
Gene organization within MGE regions
Location: 1276098..1317135
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4838_RS05510 (N4838_005520) | - | 1276098..1277255 (-) | 1158 | WP_262960505.1 | tyrosine-type recombinase/integrase | - |
| N4838_RS05515 (N4838_005525) | - | 1277457..1277696 (-) | 240 | WP_262960506.1 | hypothetical protein | - |
| N4838_RS05520 (N4838_005530) | - | 1277693..1277899 (-) | 207 | WP_262960507.1 | DUF4060 family protein | - |
| N4838_RS05525 (N4838_005535) | - | 1277912..1278178 (-) | 267 | WP_262960508.1 | DUF5405 family protein | - |
| N4838_RS05530 (N4838_005540) | - | 1278168..1278506 (-) | 339 | WP_262960509.1 | phage protein NinX family protein | - |
| N4838_RS05535 (N4838_005545) | - | 1278884..1279159 (-) | 276 | WP_262960511.1 | hypothetical protein | - |
| N4838_RS05540 (N4838_005550) | - | 1279221..1279676 (-) | 456 | WP_262960512.1 | hypothetical protein | - |
| N4838_RS05545 (N4838_005555) | - | 1279687..1279860 (-) | 174 | WP_244061634.1 | DUF7167 family protein | - |
| N4838_RS05550 (N4838_005560) | - | 1280249..1280437 (-) | 189 | WP_262960513.1 | hypothetical protein | - |
| N4838_RS05555 (N4838_005565) | - | 1280482..1280769 (-) | 288 | WP_125892508.1 | hypothetical protein | - |
| N4838_RS05560 (N4838_005570) | ssb | 1280785..1281348 (-) | 564 | WP_262960514.1 | single-stranded DNA-binding protein | Machinery gene |
| N4838_RS05565 (N4838_005575) | recT | 1281341..1282144 (-) | 804 | WP_196732857.1 | recombination protein RecT | - |
| N4838_RS05570 (N4838_005580) | - | 1282137..1282517 (-) | 381 | Protein_1087 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| N4838_RS05575 (N4838_005585) | - | 1282675..1283160 (+) | 486 | WP_262960516.1 | hypothetical protein | - |
| N4838_RS05580 (N4838_005590) | - | 1283157..1283624 (+) | 468 | WP_262960517.1 | DUF1833 domain-containing protein | - |
| N4838_RS05585 (N4838_005595) | - | 1283624..1284016 (+) | 393 | WP_262960518.1 | NlpC/P60 family protein | - |
| N4838_RS05590 (N4838_005600) | - | 1284003..1286480 (+) | 2478 | WP_262960519.1 | host specificity factor TipJ family phage tail protein | - |
| N4838_RS05595 (N4838_005605) | - | 1286542..1288779 (+) | 2238 | WP_262960520.1 | hypothetical protein | - |
| N4838_RS05600 (N4838_005610) | - | 1289301..1290509 (+) | 1209 | WP_262960521.1 | tyrosine-type recombinase/integrase | - |
| N4838_RS05605 (N4838_005615) | - | 1290761..1291816 (+) | 1056 | WP_262960522.1 | AAA family ATPase | - |
| N4838_RS05610 (N4838_005620) | - | 1291720..1292054 (-) | 335 | Protein_1095 | IS3 family transposase | - |
| N4838_RS05615 (N4838_005625) | - | 1292223..1292600 (-) | 378 | WP_262960523.1 | hypothetical protein | - |
| N4838_RS05620 (N4838_005630) | - | 1292901..1293266 (-) | 366 | WP_262960524.1 | hypothetical protein | - |
| N4838_RS05625 (N4838_005635) | - | 1293271..1303884 (-) | 10614 | WP_262960525.1 | hemagglutinin repeat-containing protein | - |
| N4838_RS05630 (N4838_005640) | - | 1303963..1305603 (-) | 1641 | WP_262960579.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| N4838_RS05635 (N4838_005645) | - | 1306243..1307097 (-) | 855 | WP_262960526.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| N4838_RS05640 (N4838_005650) | - | 1307090..1307983 (-) | 894 | WP_262960527.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| N4838_RS05645 (N4838_005655) | - | 1307980..1309533 (-) | 1554 | WP_262960528.1 | recombinase family protein | - |
| N4838_RS05650 (N4838_005660) | - | 1309582..1309920 (+) | 339 | WP_262960529.1 | hypothetical protein | - |
| N4838_RS05655 (N4838_005665) | - | 1310127..1310540 (-) | 414 | WP_262960530.1 | zinc-ribbon domain-containing protein | - |
| N4838_RS05660 (N4838_005670) | - | 1310807..1311025 (-) | 219 | WP_262960531.1 | helix-turn-helix transcriptional regulator | - |
| N4838_RS05665 (N4838_005675) | - | 1311139..1312179 (-) | 1041 | WP_262960532.1 | inovirus Gp2 family protein | - |
| N4838_RS05670 (N4838_005680) | - | 1312702..1313622 (+) | 921 | WP_262960533.1 | hypothetical protein | - |
| N4838_RS05675 (N4838_005685) | - | 1313838..1314566 (+) | 729 | WP_262960534.1 | DUF3944 domain-containing protein | - |
| N4838_RS05680 (N4838_005690) | - | 1314623..1315312 (+) | 690 | WP_262960535.1 | helix-turn-helix transcriptional regulator | - |
| N4838_RS05685 (N4838_005695) | - | 1315309..1316361 (+) | 1053 | WP_262960536.1 | hypothetical protein | - |
| N4838_RS05690 (N4838_005700) | - | 1316411..1316629 (+) | 219 | WP_262960537.1 | hypothetical protein | - |
| N4838_RS05695 (N4838_005705) | - | 1316719..1317135 (+) | 417 | WP_262960538.1 | antirestriction protein | - |
Sequence
Protein
Download Length: 187 a.a. Molecular weight: 20137.45 Da Isoelectric Point: 6.2362
>NTDB_id=820253 N4838_RS05560 WP_262960514.1 1280785..1281348(-) (ssb) [Providencia rettgeri strain YZLc5-3]
MASRGVNKVILIGHLGQDPEIRYMPAGGAVASLTLATSESWRDKQSGEMREKTEWHRVCIFGKLAEVAGEYLKKGSQIYV
EGSLQTRKWQDQSGQDRYTTEVAVNIGGSMQMLGGRGGDASSQGQGSQGSWGQPQQPQSTQQFSGGAAPARSGAPAPQTN
EPPMDFDDDIPFAPIGLPYPRHAIYVI
MASRGVNKVILIGHLGQDPEIRYMPAGGAVASLTLATSESWRDKQSGEMREKTEWHRVCIFGKLAEVAGEYLKKGSQIYV
EGSLQTRKWQDQSGQDRYTTEVAVNIGGSMQMLGGRGGDASSQGQGSQGSWGQPQQPQSTQQFSGGAAPARSGAPAPQTN
EPPMDFDDDIPFAPIGLPYPRHAIYVI
Nucleotide
Download Length: 564 bp
>NTDB_id=820253 N4838_RS05560 WP_262960514.1 1280785..1281348(-) (ssb) [Providencia rettgeri strain YZLc5-3]
ATGGCTAGTCGCGGAGTGAACAAGGTAATCCTCATTGGTCACTTAGGCCAAGACCCTGAAATTCGGTACATGCCAGCAGG
TGGCGCAGTAGCAAGTCTAACACTAGCCACATCAGAATCGTGGCGTGATAAGCAATCAGGTGAAATGCGCGAGAAAACAG
AGTGGCATCGAGTGTGCATCTTCGGCAAGTTGGCTGAGGTTGCAGGCGAATATCTGAAAAAAGGAAGCCAGATATACGTC
GAAGGTTCTTTGCAAACGCGCAAATGGCAAGACCAAAGCGGTCAAGACCGATACACAACAGAAGTGGCCGTAAATATCGG
CGGCTCTATGCAAATGCTAGGTGGTCGCGGCGGTGATGCGTCATCACAAGGGCAAGGTAGTCAAGGTAGCTGGGGTCAAC
CTCAACAGCCGCAATCTACGCAGCAGTTCAGCGGAGGAGCTGCACCAGCACGTTCAGGAGCGCCAGCGCCACAAACTAAT
GAGCCACCAATGGACTTTGATGACGACATCCCCTTCGCTCCTATCGGGCTTCCATATCCACGCCACGCTATTTATGTGAT
TTAA
ATGGCTAGTCGCGGAGTGAACAAGGTAATCCTCATTGGTCACTTAGGCCAAGACCCTGAAATTCGGTACATGCCAGCAGG
TGGCGCAGTAGCAAGTCTAACACTAGCCACATCAGAATCGTGGCGTGATAAGCAATCAGGTGAAATGCGCGAGAAAACAG
AGTGGCATCGAGTGTGCATCTTCGGCAAGTTGGCTGAGGTTGCAGGCGAATATCTGAAAAAAGGAAGCCAGATATACGTC
GAAGGTTCTTTGCAAACGCGCAAATGGCAAGACCAAAGCGGTCAAGACCGATACACAACAGAAGTGGCCGTAAATATCGG
CGGCTCTATGCAAATGCTAGGTGGTCGCGGCGGTGATGCGTCATCACAAGGGCAAGGTAGTCAAGGTAGCTGGGGTCAAC
CTCAACAGCCGCAATCTACGCAGCAGTTCAGCGGAGGAGCTGCACCAGCACGTTCAGGAGCGCCAGCGCCACAAACTAAT
GAGCCACCAATGGACTTTGATGACGACATCCCCTTCGCTCCTATCGGGCTTCCATATCCACGCCACGCTATTTATGTGAT
TTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
68.156 |
95.722 |
0.652 |
| ssb | Glaesserella parasuis strain SC1401 |
55.914 |
99.465 |
0.556 |
| ssb | Neisseria meningitidis MC58 |
46.667 |
96.257 |
0.449 |
| ssb | Neisseria gonorrhoeae MS11 |
46.111 |
96.257 |
0.444 |