Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R4701_RS05125 Genome accession   NZ_CP137114
Coordinates   1015445..1015681 (-) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P3054     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1010445..1020681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS05095 radA 1010738..1012099 (-) 1362 WP_075213698.1 DNA repair protein RadA Machinery gene
  R4701_RS05100 - 1012113..1012628 (-) 516 WP_000691236.1 histidine phosphatase family protein -
  R4701_RS05105 - 1012630..1013073 (-) 444 WP_000701992.1 dUTP diphosphatase -
  R4701_RS05115 tadA 1013260..1013727 (-) 468 WP_000291870.1 tRNA adenosine(34) deaminase TadA -
  R4701_RS05120 - 1013928..1015214 (-) 1287 WP_001819018.1 adenylosuccinate synthase -
  R4701_RS05125 comW 1015445..1015681 (-) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  R4701_RS05130 - 1015947..1016756 (+) 810 Protein_1019 transposase -
  R4701_RS05135 - 1016791..1017000 (-) 210 Protein_1020 transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=820102 R4701_RS05125 WP_000939546.1 1015445..1015681(-) (comW) [Streptococcus pneumoniae strain 15P3054]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=820102 R4701_RS05125 WP_000939546.1 1015445..1015681(-) (comW) [Streptococcus pneumoniae strain 15P3054]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756