Detailed information NTG0820091

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R4701_RS03905
• Genome accession: NZ_CP137114
• Coordinates: 788819..789817 (-)
• Length: 332 a.a.
• NCBI ID: WP_001810337.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 15P3054
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 783819..794817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4701_RS03885	eeP	785184..786443 (-)	1260	WP_000900660.1	RIP metalloprotease RseP	Regulator
R4701_RS03890	-	786465..787268 (-)	804	WP_317805996.1	phosphatidate cytidylyltransferase	-
R4701_RS03895	-	787277..788035 (-)	759	WP_000466719.1	isoprenyl transferase	-
R4701_RS03900	-	788266..788838 (-)	573	WP_001098904.1	nucleotidyltransferase family protein	-
R4701_RS03905	ruvB	788819..789817 (-)	999	WP_001810337.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R4701_RS03910	-	789951..790043 (+)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
R4701_RS03915	-	790858..791274 (-)	417	WP_000628392.1	GNAT family N-acetyltransferase	-
R4701_RS03920	-	791286..791981 (-)	696	WP_001144901.1	GNAT family N-acetyltransferase	-
R4701_RS03925	-	792037..792879 (-)	843	WP_001081167.1	hypothetical protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37306.76 Da
• Isoelectric Point: 4.5053

>NTDB_id=820091 R4701_RS03905 WP_001810337.1 788819..789817(-) (ruvB) [Streptococcus pneumoniae strain 15P3054]
MSRILDNEMMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=820091 R4701_RS03905 WP_001810337.1 788819..789817(-) (ruvB) [Streptococcus pneumoniae strain 15P3054]
ATGAGTAGAATTTTAGATAATGAGATGATGGGTGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATTGGTCAGGATAAGGTTAAGGATCAGCTTCAGATCTTTATCGAAGCCGCTAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGCCCTCCAGGGCTTGGGAAAACAACCATGGCTTTTGTCATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCTGGTCCTGTTATCGAAAAAGCGGGTGATTTGGTAGCGATTTTGAATGAGTTAGAGCCTGGAGATGTCCT
CTTTATTGACGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATAGATA
TTATGATTGGGGCTGGTGAGGGTAGTCGTAGTGTTCATTTGGAGTTACCACCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGCCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGGACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATTGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTGAATATCGCCGAAGAGCGTGAGACAG
TTGAAGATATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.699	100	0.997
ruvB	Streptococcus pneumoniae D39	99.699	100	0.997
ruvB	Streptococcus pneumoniae TIGR4	99.398	100	0.994
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47