Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QEP68_RS05460 Genome accession   NZ_CP123215
Coordinates   1216956..1218173 (-) Length   405 a.a.
NCBI ID   WP_005732330.1    Uniprot ID   A0A3M4TFK7
Organism   Pseudomonas amygdali pv. aesculi strain 2203     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1211956..1223173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP68_RS05425 - 1211990..1213288 (-) 1299 WP_005732325.1 NAD(P)/FAD-dependent oxidoreductase -
  QEP68_RS30190 - 1213385..1213621 (-) 237 WP_327203937.1 DUF3094 family protein -
  QEP68_RS05430 - 1213506..1214039 (-) 534 WP_005732326.1 MOSC domain-containing protein -
  QEP68_RS05435 - 1214036..1214665 (-) 630 WP_003430735.1 DUF1780 domain-containing protein -
  QEP68_RS05440 - 1214807..1215058 (+) 252 Protein_1071 hypothetical protein -
  QEP68_RS05445 yacG 1215256..1215465 (-) 210 WP_002552020.1 DNA gyrase inhibitor YacG -
  QEP68_RS05450 coaE 1215462..1216085 (-) 624 WP_005732328.1 dephospho-CoA kinase -
  QEP68_RS05455 pilD 1216082..1216954 (-) 873 WP_010216946.1 A24 family peptidase Machinery gene
  QEP68_RS05460 pilC 1216956..1218173 (-) 1218 WP_005732330.1 type II secretion system F family protein Machinery gene
  QEP68_RS05465 pilB 1218176..1219870 (-) 1695 WP_010216952.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QEP68_RS05470 - 1220098..1220526 (+) 429 WP_005732335.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QEP68_RS05475 - 1221462..1222007 (-) 546 WP_010216954.1 DUF1523 family protein -
  QEP68_RS05480 - 1222127..1223125 (+) 999 WP_005732338.1 ATP-grasp domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44117.07 Da        Isoelectric Point: 10.2266

>NTDB_id=820044 QEP68_RS05460 WP_005732330.1 1216956..1218173(-) (pilC) [Pseudomonas amygdali pv. aesculi strain 2203]
MASKAAKVIVYTWEGVDKKGTKTSGELNGHNLALVKAQLRKQGINPTKVRKKSASIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKPEYFDELFCNLVDAGEQAGALESLLDRVASYKEKT
EKLKAKIKKAMTYPAAVLIVAIIVSGILLIKVVPQFQSIFSSFGAELPAFTLMVIGLSDIVQKWWLAIVFAFFSGIFALK
RVYKKSQKFRDGLDRLLLKVPIIGPLIFKSSVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFKNAVQKVKQDVSTGM
QLNFSMRSTGVFPTLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=820044 QEP68_RS05460 WP_005732330.1 1216956..1218173(-) (pilC) [Pseudomonas amygdali pv. aesculi strain 2203]
ATGGCCAGCAAGGCAGCAAAAGTCATCGTTTACACTTGGGAAGGTGTCGACAAGAAAGGCACCAAGACCAGCGGCGAACT
GAACGGCCATAACCTGGCACTCGTAAAAGCCCAGTTGCGCAAGCAAGGTATCAACCCCACCAAGGTACGCAAAAAATCTG
CGTCGATCTTCGGCAAAGGCAAGAAGATTAAGCCATTGGACATCGCGTTTTTTTCTCGGCAGATGGCAACGATGATGAAG
GCTGGCGTGCCATTGCTGCAGTCGTTTGACATCATCAGTGAGGGTGCTGAAAATCCGAATATGCGGTCGCTGGTAGAATC
TCTAAAGCAGGAGGTTTCAGCCGGCAACAGCTTTGCCACCGCGTTACGAAGAAAACCAGAATACTTCGATGAGCTTTTCT
GTAATTTAGTGGATGCAGGGGAACAGGCGGGAGCACTTGAAAGCCTGCTGGACCGAGTAGCAAGCTACAAGGAGAAGACA
GAGAAGCTCAAGGCTAAGATAAAAAAGGCCATGACCTACCCGGCCGCAGTATTGATTGTGGCGATCATCGTTTCAGGTAT
TTTGCTTATAAAGGTTGTGCCGCAGTTTCAGTCAATTTTTTCCAGCTTTGGTGCGGAACTACCGGCCTTTACGTTAATGG
TTATCGGTCTTTCAGACATAGTACAAAAGTGGTGGCTAGCTATCGTATTCGCTTTTTTTTCTGGCATTTTTGCACTTAAA
CGAGTATACAAAAAATCTCAAAAATTTCGTGACGGACTTGATCGTTTATTATTAAAAGTACCGATAATTGGCCCGTTAAT
TTTTAAATCCTCGGTCGCACGATACGCCCGAACCCTTTCAACTACGTTCGCCGCTGGTGTTCCGCTGGTAGAGGCTCTTG
ATTCGGTCGCTGGGGCCACTGGCAACGTAGTCTTCAAAAACGCGGTCCAAAAAGTCAAACAGGACGTTTCCACTGGTATG
CAGTTGAATTTCTCGATGCGTTCGACAGGTGTGTTCCCTACCTTAGCGATCCAAATGACCGCAATTGGTGAGGAATCAGG
CGCGTTAGACACCATGCTGGACAAGGTAGCGACCTACTACGAGGATGAGGTCGACAATATGGTCGACAACCTAACCAGCC
TGATGGAGCCCATGATCATGGCTGTTCTGGGTGTCATCGTCGGCGGCCTTGTTATCGCCATGTACCTCCCCATTTTCAAA
CTCGGAAACGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M4TFK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.086

100

0.731
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

59.804

100

0.602
  pilC Legionella pneumophila strain ERS1305867

51.232

100

0.514
  pilC Vibrio campbellii strain DS40M4

42.365

100

0.425
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilG Neisseria gonorrhoeae MS11

42.065

98.025

0.412
  pilG Neisseria meningitidis 44/76-A

42.065

98.025

0.412
  pilC Thermus thermophilus HB27

38.404

99.012

0.38