Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGE   Type   Machinery gene
Locus tag   QAY67_RS08030 Genome accession   NZ_CP123160
Coordinates   1670707..1671006 (-) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain BE-MSSA8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1665707..1676006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY67_RS08005 (QAY67_08030) gcvPA 1666919..1668265 (-) 1347 WP_411888894.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QAY67_RS08010 (QAY67_08035) gcvT 1668285..1669376 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  QAY67_RS08015 (QAY67_08040) - 1669535..1670059 (-) 525 WP_001015123.1 shikimate kinase -
  QAY67_RS08020 (QAY67_08045) - 1670049..1670195 (-) 147 WP_001789879.1 hypothetical protein -
  QAY67_RS08025 (QAY67_08050) comGF 1670292..1670789 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAY67_RS08030 (QAY67_08055) comGE 1670707..1671006 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAY67_RS08035 (QAY67_08060) comGD 1670993..1671439 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAY67_RS08040 (QAY67_08065) comGC 1671417..1671728 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAY67_RS08045 (QAY67_08070) comGB 1671742..1672812 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAY67_RS08050 (QAY67_08075) comGA 1672784..1673758 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QAY67_RS08055 (QAY67_08080) - 1673783..1675429 (-) 1647 WP_000277718.1 IS1182 family transposase -

Sequence


Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=819744 QAY67_RS08030 WP_000844413.1 1670707..1671006(-) (comGE) [Staphylococcus aureus strain BE-MSSA8]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=819744 QAY67_RS08030 WP_000844413.1 1670707..1671006(-) (comGE) [Staphylococcus aureus strain BE-MSSA8]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1

  comGE Staphylococcus aureus N315

98.99

100

0.99