Detailed information NTG0819612

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R4712_RS03985
• Genome accession: NZ_CP137110
• Coordinates: 809940..810938 (-)
• Length: 332 a.a.
• NCBI ID: WP_078102879.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 16H2041
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 804940..815938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4712_RS03965	eeP	806305..807564 (-)	1260	WP_000900660.1	RIP metalloprotease RseP	Regulator
R4712_RS03970	-	807586..808389 (-)	804	WP_000189857.1	phosphatidate cytidylyltransferase	-
R4712_RS03975	-	808398..809156 (-)	759	WP_000466719.1	isoprenyl transferase	-
R4712_RS03980	-	809387..809959 (-)	573	WP_041171033.1	nucleotidyltransferase family protein	-
R4712_RS03985	ruvB	809940..810938 (-)	999	WP_078102879.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R4712_RS03990	-	811072..811163 (+)	92	Protein_794	type I toxin-antitoxin system Fst family toxin	-
R4712_RS03995	-	811977..812393 (-)	417	WP_044812262.1	GNAT family N-acetyltransferase	-
R4712_RS04000	-	812405..813100 (-)	696	WP_001144913.1	GNAT family N-acetyltransferase	-
R4712_RS04005	leuS	813295..815796 (-)	2502	WP_044812260.1	leucine--tRNA ligase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37270.69 Da
• Isoelectric Point: 4.5053

>NTDB_id=819612 R4712_RS03985 WP_078102879.1 809940..810938(-) (ruvB) [Streptococcus pneumoniae strain 16H2041]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTIAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=819612 R4712_RS03985 WP_078102879.1 809940..810938(-) (ruvB) [Streptococcus pneumoniae strain 16H2041]
ATGAGTAGAATTTTAGATAATGAGATAATGGGGGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATCGGACAGGATAAGGTCAAGGACCAGCTACAAATCTTTATTGAAGCTGCCAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGGCCTCCAGGTCTCGGGAAAACGACCATAGCCTTTGTTATTGCCAACGAACTGGGAGTCAATCTT
AAGCAGACGTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCTATTTTGAATGAGTTAGAGCCTGGGGATGTCCT
TTTTATTGATGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATAGATA
TTATGATTGGGGCTGGTGAGGGTAGTCGTAGTGTTCATTTGGAGTTACCACCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCCAATCCGCTACGGGCACGTTTTGGGATTACAGGCCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGGACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATTGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTGAATATCGCCGAAGAGCGTGAGACAG
TTGAAGATATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.699	100	0.997
ruvB	Streptococcus pneumoniae D39	99.699	100	0.997
ruvB	Streptococcus pneumoniae TIGR4	98.795	100	0.988
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	51.084	97.289	0.497
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47