Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAY79_RS01140 | Genome accession | NZ_CP123154 |
| Coordinates | 217578..218081 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain GE-MRSA17 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 196408..218833 | 217578..218081 | within | 0 |
Gene organization within MGE regions
Location: 196408..218833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAY79_RS00980 (QAY79_00980) | - | 196408..196659 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| QAY79_RS00985 (QAY79_00985) | - | 196959..197222 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| QAY79_RS00990 (QAY79_00990) | - | 197359..197931 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| QAY79_RS00995 (QAY79_00995) | - | 198112..198480 (-) | 369 | WP_000849163.1 | YxeA family protein | - |
| QAY79_RS01000 (QAY79_01000) | selX | 198849..199460 (-) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| QAY79_RS01005 (QAY79_01005) | - | 199666..200379 (+) | 714 | Protein_179 | tyrosine-type recombinase/integrase | - |
| QAY79_RS01010 (QAY79_01010) | - | 200418..201356 (+) | 939 | WP_001817700.1 | Abi family protein | - |
| QAY79_RS01015 (QAY79_01015) | - | 202506..202691 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| QAY79_RS01020 (QAY79_01020) | - | 202693..202803 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| QAY79_RS01025 (QAY79_01025) | - | 202874..203026 (-) | 153 | WP_001795626.1 | hypothetical protein | - |
| QAY79_RS01030 (QAY79_01030) | - | 203269..203385 (-) | 117 | Protein_184 | hypothetical protein | - |
| QAY79_RS01035 (QAY79_01035) | - | 203874..204842 (-) | 969 | WP_000801979.1 | Abi family protein | - |
| QAY79_RS01040 (QAY79_01045) | - | 205119..205688 (-) | 570 | WP_001293080.1 | terminase small subunit | - |
| QAY79_RS01045 (QAY79_01050) | - | 205685..206026 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| QAY79_RS01050 (QAY79_01055) | - | 206029..206556 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| QAY79_RS01055 (QAY79_01060) | - | 206607..206825 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| QAY79_RS01060 (QAY79_01065) | - | 206843..207421 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| QAY79_RS01065 (QAY79_01070) | - | 207433..207774 (-) | 342 | WP_374731409.1 | pathogenicity island protein | - |
| QAY79_RS01070 (QAY79_01075) | - | 208121..208762 (-) | 642 | WP_001019769.1 | hypothetical protein | - |
| QAY79_RS01075 (QAY79_01080) | - | 208759..209043 (-) | 285 | WP_000998182.1 | hypothetical protein | - |
| QAY79_RS01080 (QAY79_01085) | - | 209045..209407 (-) | 363 | WP_001039173.1 | hypothetical protein | - |
| QAY79_RS01085 (QAY79_01090) | - | 209693..211162 (-) | 1470 | WP_411896938.1 | VapE domain-containing protein | - |
| QAY79_RS01090 (QAY79_01095) | - | 211179..212048 (-) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| QAY79_RS01095 (QAY79_01100) | tscT | 212112..212429 (-) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| QAY79_RS01100 (QAY79_01105) | tscA | 212432..212641 (-) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| QAY79_RS01105 (QAY79_01110) | - | 212634..212780 (-) | 147 | WP_031824147.1 | hypothetical protein | - |
| QAY79_RS01110 (QAY79_01115) | - | 212792..213064 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| QAY79_RS01115 (QAY79_01120) | - | 213065..213277 (-) | 213 | WP_000794656.1 | helix-turn-helix domain-containing protein | - |
| QAY79_RS01120 (QAY79_01125) | - | 213421..214116 (+) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| QAY79_RS01125 (QAY79_01130) | - | 214572..215789 (+) | 1218 | WP_000270130.1 | tyrosine-type recombinase/integrase | - |
| QAY79_RS01130 (QAY79_01135) | - | 216272..217102 (+) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| QAY79_RS01135 (QAY79_01140) | rpsR | 217284..217526 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| QAY79_RS01140 (QAY79_01145) | ssbA | 217578..218081 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| QAY79_RS01145 (QAY79_01150) | rpsF | 218102..218398 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| QAY79_RS01150 (QAY79_01155) | - | 218642..218833 (+) | 192 | WP_001052484.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=819600 QAY79_RS01140 WP_000934799.1 217578..218081(-) (ssbA) [Staphylococcus aureus strain GE-MRSA17]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=819600 QAY79_RS01140 WP_000934799.1 217578..218081(-) (ssbA) [Staphylococcus aureus strain GE-MRSA17]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |