Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO42_RS14050 | Genome accession | NZ_CP123139 |
| Coordinates | 2820549..2821019 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610647.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain GE-MRSA22 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2802999..2827732 | 2820549..2821019 | within | 0 |
Gene organization within MGE regions
Location: 2802999..2827732
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO42_RS13920 (QAO42_13895) | - | 2802999..2803843 (+) | 845 | Protein_2705 | class I SAM-dependent methyltransferase | - |
| QAO42_RS13925 (QAO42_13900) | - | 2804215..2805438 (-) | 1224 | WP_000206641.1 | ArgE/DapE family deacylase | - |
| QAO42_RS13930 (QAO42_13905) | lukH | 2805873..2806925 (+) | 1053 | WP_000791416.1 | bi-component leukocidin LukGH subunit H | - |
| QAO42_RS13935 (QAO42_13910) | lukG | 2806947..2807963 (+) | 1017 | WP_000595402.1 | bi-component leukocidin LukGH subunit G | - |
| QAO42_RS13940 (QAO42_13915) | sph | 2808201..2809025 (-) | 825 | Protein_2709 | sphingomyelin phosphodiesterase | - |
| QAO42_RS13945 (QAO42_13920) | - | 2809082..2810119 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| QAO42_RS13950 (QAO42_13925) | - | 2810310..2811023 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAO42_RS13955 (QAO42_13930) | - | 2811101..2811283 (-) | 183 | WP_000705236.1 | hypothetical protein | - |
| QAO42_RS13960 (QAO42_13935) | - | 2811354..2811539 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| QAO42_RS13965 (QAO42_13940) | - | 2811536..2811682 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| QAO42_RS13970 (QAO42_13945) | - | 2811756..2812610 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| QAO42_RS13975 (QAO42_13950) | - | 2812622..2813338 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| QAO42_RS13980 (QAO42_13955) | - | 2813502..2813744 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| QAO42_RS13985 (QAO42_13960) | - | 2813757..2814203 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| QAO42_RS13990 (QAO42_13965) | - | 2814218..2814358 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| QAO42_RS13995 (QAO42_13970) | - | 2814351..2814560 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| QAO42_RS14000 (QAO42_13975) | - | 2814617..2815366 (+) | 750 | WP_001148590.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO42_RS14005 (QAO42_13980) | - | 2815379..2815639 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| QAO42_RS14010 (QAO42_13985) | - | 2815663..2815818 (-) | 156 | Protein_2723 | hypothetical protein | - |
| QAO42_RS14015 (QAO42_13990) | - | 2815872..2816192 (+) | 321 | WP_001120936.1 | DUF771 domain-containing protein | - |
| QAO42_RS14020 (QAO42_13995) | - | 2816189..2816350 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| QAO42_RS14025 (QAO42_14000) | - | 2816443..2816703 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| QAO42_RS14030 (QAO42_14005) | - | 2816712..2816976 (+) | 265 | Protein_2727 | hypothetical protein | - |
| QAO42_RS14035 (QAO42_14010) | - | 2816985..2818928 (+) | 1944 | WP_000700571.1 | AAA family ATPase | - |
| QAO42_RS14040 (QAO42_14015) | - | 2818930..2819850 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| QAO42_RS14045 (QAO42_14020) | - | 2819931..2820548 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| QAO42_RS14050 (QAO42_14025) | ssbA | 2820549..2821019 (+) | 471 | WP_000610647.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO42_RS14055 (QAO42_14030) | - | 2821049..2821966 (+) | 918 | WP_041497902.1 | DnaD domain protein | - |
| QAO42_RS14060 (QAO42_14035) | - | 2821973..2822191 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAO42_RS14065 (QAO42_14040) | - | 2822200..2822604 (+) | 405 | WP_000401966.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO42_RS14070 (QAO42_14045) | - | 2822617..2822985 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO42_RS14075 (QAO42_14050) | - | 2822989..2823231 (+) | 243 | WP_000131377.1 | phi PVL orf 51-like protein | - |
| QAO42_RS14080 (QAO42_14055) | - | 2823245..2823631 (+) | 387 | Protein_2737 | hypothetical protein | - |
| QAO42_RS14085 (QAO42_14060) | - | 2823628..2823822 (+) | 195 | WP_000983954.1 | hypothetical protein | - |
| QAO42_RS14090 (QAO42_14065) | - | 2823819..2824268 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| QAO42_RS14095 (QAO42_14070) | - | 2824265..2824549 (+) | 285 | WP_001105621.1 | hypothetical protein | - |
| QAO42_RS14100 (QAO42_14075) | - | 2824542..2824796 (+) | 255 | WP_001065084.1 | DUF1024 family protein | - |
| QAO42_RS14105 (QAO42_14080) | - | 2824783..2824953 (+) | 171 | WP_000714409.1 | hypothetical protein | - |
| QAO42_RS14110 (QAO42_14085) | - | 2824946..2825479 (+) | 534 | WP_000185642.1 | dUTP diphosphatase | - |
| QAO42_RS14115 (QAO42_14090) | - | 2825516..2825803 (+) | 288 | WP_000195809.1 | DUF1381 domain-containing protein | - |
| QAO42_RS14120 (QAO42_14095) | - | 2825796..2826032 (+) | 237 | WP_000608280.1 | hypothetical protein | - |
| QAO42_RS14125 (QAO42_14100) | - | 2826022..2826411 (+) | 390 | WP_170267442.1 | hypothetical protein | - |
| QAO42_RS14130 (QAO42_14105) | rinB | 2826408..2826557 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAO42_RS14135 (QAO42_14110) | - | 2826557..2826757 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QAO42_RS14140 (QAO42_14115) | - | 2826785..2827201 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAO42_RS14145 (QAO42_14120) | - | 2827433..2827732 (+) | 300 | WP_000988333.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=819423 QAO42_RS14050 WP_000610647.1 2820549..2821019(+) (ssbA) [Staphylococcus aureus strain GE-MRSA22]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=819423 QAO42_RS14050 WP_000610647.1 2820549..2821019(+) (ssbA) [Staphylococcus aureus strain GE-MRSA22]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |