Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAY82_RS13595 | Genome accession | NZ_CP123137 |
| Coordinates | 2772168..2772638 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain GE-MRSA23 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2751083..2777684 | 2772168..2772638 | within | 0 |
Gene organization within MGE regions
Location: 2751083..2777684
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAY82_RS13450 (QAY82_13445) | groES | 2751083..2751367 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAY82_RS13455 (QAY82_13450) | groL | 2751443..2753059 (+) | 1617 | WP_000240655.1 | chaperonin GroEL | - |
| QAY82_RS13460 (QAY82_13455) | - | 2753599..2754906 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| QAY82_RS13465 (QAY82_13460) | - | 2755350..2756573 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| QAY82_RS13470 (QAY82_13465) | lukH | 2757009..2758064 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| QAY82_RS13475 (QAY82_13470) | lukG | 2758086..2759102 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| QAY82_RS13480 (QAY82_13475) | sph | 2759340..2760164 (-) | 825 | Protein_2613 | sphingomyelin phosphodiesterase | - |
| QAY82_RS13485 (QAY82_13480) | - | 2760221..2761258 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| QAY82_RS13490 (QAY82_13485) | - | 2761452..2762156 (-) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAY82_RS13495 (QAY82_13490) | - | 2762296..2762463 (-) | 168 | WP_000705241.1 | hypothetical protein | - |
| QAY82_RS13500 (QAY82_13495) | - | 2762533..2762718 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| QAY82_RS13505 (QAY82_13500) | - | 2762715..2762861 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| QAY82_RS13510 (QAY82_13505) | - | 2762935..2763789 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| QAY82_RS13515 (QAY82_13510) | - | 2763801..2764517 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| QAY82_RS13520 (QAY82_13515) | - | 2764681..2764923 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| QAY82_RS13525 (QAY82_13520) | - | 2764936..2765382 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| QAY82_RS13530 (QAY82_13525) | - | 2765397..2765537 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| QAY82_RS13535 (QAY82_13530) | - | 2765530..2765739 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| QAY82_RS13540 (QAY82_13535) | - | 2765796..2766545 (+) | 750 | WP_001148587.1 | phage antirepressor KilAC domain-containing protein | - |
| QAY82_RS13545 (QAY82_13540) | - | 2766561..2766758 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| QAY82_RS13550 (QAY82_13545) | - | 2766745..2767125 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| QAY82_RS13555 (QAY82_13550) | - | 2767180..2767503 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| QAY82_RS13560 (QAY82_13555) | - | 2767500..2767661 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| QAY82_RS13565 (QAY82_13560) | - | 2767756..2768058 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| QAY82_RS13570 (QAY82_13565) | - | 2768063..2768323 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| QAY82_RS13575 (QAY82_13570) | - | 2768332..2768595 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAY82_RS13580 (QAY82_13575) | - | 2768604..2770547 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| QAY82_RS13585 (QAY82_13580) | - | 2770549..2771469 (+) | 921 | WP_000138478.1 | recombinase RecT | - |
| QAY82_RS13590 (QAY82_13585) | - | 2771550..2772167 (+) | 618 | WP_078065370.1 | MBL fold metallo-hydrolase | - |
| QAY82_RS13595 (QAY82_13590) | ssbA | 2772168..2772638 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| QAY82_RS13600 (QAY82_13595) | - | 2772668..2773561 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| QAY82_RS13605 (QAY82_13600) | - | 2773568..2773786 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAY82_RS13610 (QAY82_13605) | - | 2773795..2774199 (+) | 405 | WP_000401979.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAY82_RS13615 (QAY82_13610) | - | 2774212..2774583 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAY82_RS13620 (QAY82_13615) | - | 2774583..2774840 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| QAY82_RS13625 (QAY82_13620) | - | 2774843..2775085 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| QAY82_RS13630 (QAY82_13625) | - | 2775100..2775345 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| QAY82_RS13635 (QAY82_13630) | - | 2775342..2775878 (+) | 537 | WP_000185693.1 | dUTPase | - |
| QAY82_RS13640 (QAY82_13635) | - | 2775915..2776160 (+) | 246 | WP_001282071.1 | hypothetical protein | - |
| QAY82_RS13645 (QAY82_13640) | - | 2776157..2776363 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| QAY82_RS13650 (QAY82_13645) | rinB | 2776360..2776509 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAY82_RS13655 (QAY82_13650) | - | 2776509..2776709 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| QAY82_RS13660 (QAY82_13655) | - | 2776737..2777153 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAY82_RS13665 (QAY82_13660) | - | 2777385..2777684 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=819380 QAY82_RS13595 WP_000934759.1 2772168..2772638(+) (ssbA) [Staphylococcus aureus strain GE-MRSA23]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=819380 QAY82_RS13595 WP_000934759.1 2772168..2772638(+) (ssbA) [Staphylococcus aureus strain GE-MRSA23]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |