Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1Z14_RS16875 Genome accession   NZ_AP023279
Coordinates   3616935..3617468 (+) Length   177 a.a.
NCBI ID   WP_156619690.1    Uniprot ID   -
Organism   Agrobacterium vitis strain VAT03-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3611935..3622468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Z14_RS16860 (RvVAT039_33450) - 3612362..3612901 (-) 540 WP_180605683.1 GNAT family N-acetyltransferase -
  H1Z14_RS16865 (RvVAT039_33460) - 3612909..3613712 (-) 804 WP_180605686.1 DUF72 domain-containing protein -
  H1Z14_RS16870 (RvVAT039_33470) uvrA 3613734..3616655 (-) 2922 WP_180605690.1 excinuclease ABC subunit UvrA -
  H1Z14_RS16875 (RvVAT039_33480) ssb 3616935..3617468 (+) 534 WP_156619690.1 single-stranded DNA-binding protein Machinery gene
  H1Z14_RS16880 (RvVAT039_33490) - 3617511..3617765 (+) 255 WP_071205306.1 hypothetical protein -
  H1Z14_RS16885 (RvVAT039_33500) - 3617841..3618470 (-) 630 WP_180605693.1 MarC family protein -
  H1Z14_RS16890 (RvVAT039_33510) gyrA 3618749..3621541 (+) 2793 WP_180605696.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18552.30 Da        Isoelectric Point: 5.9441

>NTDB_id=81937 H1Z14_RS16875 WP_156619690.1 3616935..3617468(+) (ssb) [Agrobacterium vitis strain VAT03-9]
MAGSVNKVILIGNLGADPEIRRTQDGKPIANLRIATSESWRDRNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGATVYI
EGQLQTRKWQDQNGNDRYSTEIVLQGFNSTLTMLGGRGDGAGGGAARGGSDFGGGGGGGYDDYGSAPARSGGASSGGRGA
SAPSGGFSRDMDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=81937 H1Z14_RS16875 WP_156619690.1 3616935..3617468(+) (ssb) [Agrobacterium vitis strain VAT03-9]
ATGGCTGGAAGCGTCAACAAGGTTATTTTGATCGGCAATCTGGGCGCTGACCCGGAAATCCGCCGTACCCAGGACGGTAA
GCCGATTGCCAACCTGCGCATCGCCACGTCCGAATCCTGGCGCGACCGTAATTCCGGCGAGCGCAAGGAAAAGACGGAAT
GGCATAGCGTGGTGATCTTCAACGAAGGTCTCTGCAAGGTGGCCGAACAATATCTGAAGAAGGGCGCAACTGTTTATATC
GAGGGCCAGCTTCAGACCCGTAAATGGCAGGACCAGAACGGCAATGACCGTTACTCGACGGAAATCGTCCTCCAGGGCTT
CAATTCGACCCTGACCATGCTTGGCGGTCGTGGCGATGGGGCAGGCGGCGGCGCTGCACGTGGCGGCAGCGATTTCGGTG
GCGGCGGCGGTGGTGGCTACGACGACTACGGCTCGGCCCCGGCCCGCAGCGGCGGTGCGTCGTCCGGCGGTCGCGGTGCC
AGTGCGCCATCGGGCGGATTCTCGCGCGATATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.299

98.305

0.514
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.486
  ssb Neisseria meningitidis MC58

39.665

100

0.401
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.401

Multiple sequence alignment