Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO17_RS14035 | Genome accession | NZ_CP123134 |
| Coordinates | 2818695..2819165 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610647.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain GE-MRSA25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2801145..2825878 | 2818695..2819165 | within | 0 |
Gene organization within MGE regions
Location: 2801145..2825878
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO17_RS13905 (QAO17_13900) | - | 2801145..2801990 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| QAO17_RS13910 (QAO17_13905) | - | 2802362..2803585 (-) | 1224 | WP_411897067.1 | ArgE/DapE family deacylase | - |
| QAO17_RS13915 (QAO17_13910) | lukH | 2804020..2805072 (+) | 1053 | WP_000791416.1 | bi-component leukocidin LukGH subunit H | - |
| QAO17_RS13920 (QAO17_13915) | lukG | 2805094..2806110 (+) | 1017 | WP_000595402.1 | bi-component leukocidin LukGH subunit G | - |
| QAO17_RS13925 (QAO17_13920) | sph | 2806348..2807172 (-) | 825 | Protein_2705 | sphingomyelin phosphodiesterase | - |
| QAO17_RS13930 (QAO17_13925) | - | 2807229..2808266 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| QAO17_RS13935 (QAO17_13930) | - | 2808457..2809170 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAO17_RS13940 (QAO17_13935) | - | 2809248..2809430 (-) | 183 | WP_000705236.1 | hypothetical protein | - |
| QAO17_RS13945 (QAO17_13940) | - | 2809501..2809686 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| QAO17_RS13950 (QAO17_13945) | - | 2809683..2809829 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| QAO17_RS13955 (QAO17_13950) | - | 2809903..2810757 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| QAO17_RS13960 (QAO17_13955) | - | 2810769..2811485 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| QAO17_RS13965 (QAO17_13960) | - | 2811649..2811891 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| QAO17_RS13970 (QAO17_13965) | - | 2811904..2812350 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| QAO17_RS13975 (QAO17_13970) | - | 2812365..2812505 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| QAO17_RS13980 (QAO17_13975) | - | 2812498..2812707 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| QAO17_RS13985 (QAO17_13980) | - | 2812764..2813513 (+) | 750 | WP_001148590.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO17_RS13990 (QAO17_13985) | - | 2813526..2813786 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| QAO17_RS13995 (QAO17_13990) | - | 2813810..2813965 (-) | 156 | Protein_2719 | hypothetical protein | - |
| QAO17_RS14000 (QAO17_13995) | - | 2814019..2814339 (+) | 321 | WP_001120936.1 | DUF771 domain-containing protein | - |
| QAO17_RS14005 (QAO17_14000) | - | 2814336..2814497 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| QAO17_RS14010 (QAO17_14005) | - | 2814590..2814850 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| QAO17_RS14015 (QAO17_14010) | - | 2814859..2815122 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAO17_RS14020 (QAO17_14015) | - | 2815131..2817074 (+) | 1944 | WP_000700571.1 | AAA family ATPase | - |
| QAO17_RS14025 (QAO17_14020) | - | 2817076..2817996 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| QAO17_RS14030 (QAO17_14025) | - | 2818077..2818694 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| QAO17_RS14035 (QAO17_14030) | ssbA | 2818695..2819165 (+) | 471 | WP_000610647.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO17_RS14040 (QAO17_14035) | - | 2819195..2820112 (+) | 918 | WP_041497902.1 | DnaD domain protein | - |
| QAO17_RS14045 (QAO17_14040) | - | 2820119..2820337 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAO17_RS14050 (QAO17_14045) | - | 2820346..2820750 (+) | 405 | WP_000401966.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO17_RS14055 (QAO17_14050) | - | 2820763..2821131 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO17_RS14060 (QAO17_14055) | - | 2821135..2821377 (+) | 243 | WP_000131377.1 | phi PVL orf 51-like protein | - |
| QAO17_RS14065 (QAO17_14060) | - | 2821391..2821777 (+) | 387 | WP_000693615.1 | hypothetical protein | - |
| QAO17_RS14070 (QAO17_14065) | - | 2821774..2821968 (+) | 195 | WP_000983954.1 | hypothetical protein | - |
| QAO17_RS14075 (QAO17_14070) | - | 2821965..2822414 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| QAO17_RS14080 (QAO17_14075) | - | 2822411..2822695 (+) | 285 | WP_001105621.1 | hypothetical protein | - |
| QAO17_RS14085 (QAO17_14080) | - | 2822688..2822942 (+) | 255 | WP_001065084.1 | DUF1024 family protein | - |
| QAO17_RS14090 (QAO17_14085) | - | 2822929..2823099 (+) | 171 | WP_000714409.1 | hypothetical protein | - |
| QAO17_RS14095 (QAO17_14090) | - | 2823092..2823625 (+) | 534 | WP_000185642.1 | dUTP diphosphatase | - |
| QAO17_RS14100 (QAO17_14095) | - | 2823662..2823949 (+) | 288 | WP_000195809.1 | DUF1381 domain-containing protein | - |
| QAO17_RS14105 (QAO17_14100) | - | 2823942..2824178 (+) | 237 | WP_000608280.1 | hypothetical protein | - |
| QAO17_RS14110 (QAO17_14105) | - | 2824168..2824557 (+) | 390 | WP_170267442.1 | hypothetical protein | - |
| QAO17_RS14115 (QAO17_14110) | rinB | 2824554..2824703 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAO17_RS14120 (QAO17_14115) | - | 2824703..2824903 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QAO17_RS14125 (QAO17_14120) | - | 2824931..2825347 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAO17_RS14130 (QAO17_14125) | - | 2825579..2825878 (+) | 300 | WP_000988333.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=819337 QAO17_RS14035 WP_000610647.1 2818695..2819165(+) (ssbA) [Staphylococcus aureus strain GE-MRSA25]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=819337 QAO17_RS14035 WP_000610647.1 2818695..2819165(+) (ssbA) [Staphylococcus aureus strain GE-MRSA25]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |