Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1Y61_RS10630 Genome accession   NZ_AP023272
Coordinates   2313077..2313604 (-) Length   175 a.a.
NCBI ID   WP_156547719.1    Uniprot ID   A0AAE5AUG2
Organism   Agrobacterium vitis strain VAR06-30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2308077..2318604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Y61_RS10615 (RvVAR0630_21340) gyrA 2309004..2311796 (-) 2793 WP_174110824.1 DNA gyrase subunit A -
  H1Y61_RS10620 (RvVAR0630_21350) - 2312075..2312704 (+) 630 WP_180572586.1 MarC family protein -
  H1Y61_RS10625 (RvVAR0630_21360) - 2312780..2313034 (-) 255 WP_180572587.1 hypothetical protein -
  H1Y61_RS10630 (RvVAR0630_21370) ssb 2313077..2313604 (-) 528 WP_156547719.1 single-stranded DNA-binding protein Machinery gene
  H1Y61_RS10635 (RvVAR0630_21380) uvrA 2313883..2316804 (+) 2922 WP_180572588.1 excinuclease ABC subunit UvrA -
  H1Y61_RS10640 (RvVAR0630_21390) - 2316826..2317629 (+) 804 WP_180572589.1 DUF72 domain-containing protein -
  H1Y61_RS10645 (RvVAR0630_21400) - 2317637..2318176 (+) 540 WP_174110881.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18438.20 Da        Isoelectric Point: 5.9441

>NTDB_id=81928 H1Y61_RS10630 WP_156547719.1 2313077..2313604(-) (ssb) [Agrobacterium vitis strain VAR06-30]
MAGSVNKVILIGNLGADPEIRRTQDGKPIANLRIATSESWRDRNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGATVYI
EGQLQTRKWQDQNGNDRYSTEIVLQGFNSTLTMLGGRGDGAGGGAARGGSDFGGGGGYDDYGSAPARSGGASSGGRGASA
PSGGFSRDMDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=81928 H1Y61_RS10630 WP_156547719.1 2313077..2313604(-) (ssb) [Agrobacterium vitis strain VAR06-30]
ATGGCTGGAAGCGTCAACAAGGTTATTTTGATCGGCAATCTGGGAGCTGACCCGGAAATCCGCCGCACCCAGGACGGTAA
GCCGATTGCCAACCTGCGCATCGCCACGTCCGAATCCTGGCGCGACCGCAATTCCGGTGAGCGCAAGGAAAAGACCGAAT
GGCATAGCGTGGTGATCTTCAACGAAGGTCTCTGCAAGGTGGCCGAACAATATCTGAAGAAGGGCGCGACCGTTTATATC
GAGGGTCAGCTTCAGACCCGTAAATGGCAGGACCAGAACGGCAATGACCGTTACTCGACGGAAATCGTCCTCCAGGGCTT
CAATTCGACCCTGACCATGCTTGGCGGTCGTGGCGATGGGGCAGGCGGCGGTGCTGCCCGTGGCGGCAGCGATTTCGGCG
GCGGCGGTGGCTACGACGACTACGGCTCGGCCCCGGCCCGCAGCGGCGGTGCGTCGTCCGGCGGTCGCGGTGCCAGTGCG
CCGTCGGGCGGATTCTCGCGCGATATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.874

99.429

0.526
  ssb Glaesserella parasuis strain SC1401

46.995

100

0.491
  ssb Neisseria gonorrhoeae MS11

40.437

100

0.423
  ssb Neisseria meningitidis MC58

39.665

100

0.406

Multiple sequence alignment