Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAY78_RS13730 | Genome accession | NZ_CP123128 |
| Coordinates | 2756165..2756635 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain GE-MSSA31 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2735584..2761967 | 2756165..2756635 | within | 0 |
Gene organization within MGE regions
Location: 2735584..2761967
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAY78_RS13590 (QAY78_13580) | groES | 2735584..2735868 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAY78_RS13595 (QAY78_13585) | groL | 2735944..2737560 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| QAY78_RS13600 (QAY78_13590) | - | 2738092..2739399 (-) | 1308 | WP_411896726.1 | TrkH family potassium uptake protein | - |
| QAY78_RS13605 (QAY78_13595) | - | 2739852..2741075 (-) | 1224 | WP_000206615.1 | ArgE/DapE family deacylase | - |
| QAY78_RS13610 (QAY78_13600) | - | 2741506..2742561 (+) | 1056 | WP_000791399.1 | leukocidin family pore-forming toxin | - |
| QAY78_RS13615 (QAY78_13605) | - | 2742583..2743602 (+) | 1020 | WP_000595616.1 | leukocidin/hemolysin toxin family protein | - |
| QAY78_RS13620 (QAY78_13610) | sph | 2743859..2744683 (-) | 825 | Protein_2641 | sphingomyelin phosphodiesterase | - |
| QAY78_RS13625 (QAY78_13615) | - | 2744740..2745777 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| QAY78_RS13630 (QAY78_13620) | - | 2745836..2746300 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| QAY78_RS13635 (QAY78_13625) | - | 2746400..2746582 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| QAY78_RS13640 (QAY78_13630) | - | 2746786..2747127 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| QAY78_RS13645 (QAY78_13635) | - | 2747133..2748065 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| QAY78_RS13650 (QAY78_13640) | - | 2748081..2748794 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| QAY78_RS13655 (QAY78_13645) | - | 2748757..2748930 (+) | 174 | WP_031908048.1 | hypothetical protein | - |
| QAY78_RS13660 (QAY78_13650) | - | 2748927..2749172 (+) | 246 | WP_043859301.1 | helix-turn-helix transcriptional regulator | - |
| QAY78_RS13665 (QAY78_13655) | - | 2749206..2749421 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| QAY78_RS13670 (QAY78_13660) | - | 2749410..2749739 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| QAY78_RS13675 (QAY78_13665) | - | 2749790..2750542 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| QAY78_RS13680 (QAY78_13670) | - | 2750558..2750755 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| QAY78_RS13685 (QAY78_13675) | - | 2750742..2751122 (-) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| QAY78_RS13690 (QAY78_13680) | - | 2751177..2751500 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| QAY78_RS13695 (QAY78_13685) | - | 2751497..2751658 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| QAY78_RS13700 (QAY78_13690) | - | 2751753..2752055 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| QAY78_RS13705 (QAY78_13695) | - | 2752060..2752320 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| QAY78_RS13710 (QAY78_13700) | - | 2752329..2752592 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAY78_RS13715 (QAY78_13705) | - | 2752601..2754544 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| QAY78_RS13720 (QAY78_13710) | - | 2754546..2755466 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| QAY78_RS13725 (QAY78_13715) | - | 2755547..2756164 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| QAY78_RS13730 (QAY78_13720) | ssbA | 2756165..2756635 (+) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| QAY78_RS13735 (QAY78_13725) | - | 2756665..2757558 (+) | 894 | WP_000148321.1 | DnaD domain protein | - |
| QAY78_RS13740 (QAY78_13730) | - | 2757565..2757783 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| QAY78_RS13745 (QAY78_13735) | - | 2757792..2758196 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAY78_RS13750 (QAY78_13740) | - | 2758209..2758577 (+) | 369 | WP_411896727.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAY78_RS13755 (QAY78_13745) | - | 2758581..2758823 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| QAY78_RS13760 (QAY78_13750) | - | 2758838..2759092 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| QAY78_RS13765 (QAY78_13755) | - | 2759079..2759249 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| QAY78_RS13770 (QAY78_13760) | - | 2759242..2759778 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| QAY78_RS13775 (QAY78_13765) | - | 2759815..2760060 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| QAY78_RS13780 (QAY78_13770) | - | 2760057..2760263 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| QAY78_RS13785 (QAY78_13775) | - | 2760260..2760646 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| QAY78_RS13790 (QAY78_13780) | rinB | 2760643..2760792 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAY78_RS13795 (QAY78_13785) | - | 2760792..2760992 (+) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| QAY78_RS13800 (QAY78_13790) | - | 2761020..2761436 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAY78_RS13805 (QAY78_13795) | - | 2761668..2761967 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=819213 QAY78_RS13730 WP_000610648.1 2756165..2756635(+) (ssbA) [Staphylococcus aureus strain GE-MSSA31]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=819213 QAY78_RS13730 WP_000610648.1 2756165..2756635(+) (ssbA) [Staphylococcus aureus strain GE-MSSA31]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |