Detailed information NTG0081919

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R8613_RS01430
• Genome accession: NZ_AP026919
• Coordinates: 248354..249352 (+)
• Length: 332 a.a.
• NCBI ID: WP_001837006.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700012
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 243354..254352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8613_RS01410 (PC0012_02620)	leuS	243495..245996 (+)	2502	WP_317648365.1	leucine--tRNA ligase	-
R8613_RS01415 (PC0012_02630)	-	246190..246885 (+)	696	WP_001144913.1	GNAT family N-acetyltransferase	-
R8613_RS01420 (PC0012_02640)	-	246897..247313 (+)	417	WP_000628391.1	GNAT family N-acetyltransferase	-
R8613_RS01425	-	248128..248220 (-)	93	WP_001864015.1	type I toxin-antitoxin system Fst family toxin	-
R8613_RS01430 (PC0012_02650)	ruvB	248354..249352 (+)	999	WP_001837006.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R8613_RS01435 (PC0012_02660)	-	249333..249905 (+)	573	WP_001098903.1	nucleotidyltransferase family protein	-
R8613_RS01440 (PC0012_02670)	-	250136..250894 (+)	759	WP_000466719.1	isoprenyl transferase	-
R8613_RS01445 (PC0012_02680)	-	250903..251706 (+)	804	WP_000189871.1	phosphatidate cytidylyltransferase	-
R8613_RS01450 (PC0012_02690)	eeP	251728..252987 (+)	1260	WP_023396132.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37292.73 Da
• Isoelectric Point: 4.5053

>NTDB_id=81919 R8613_RS01430 WP_001837006.1 248354..249352(+) (ruvB) [Streptococcus pneumoniae strain PZ900700012]
MSRILDNEMMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DVITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=81919 R8613_RS01430 WP_001837006.1 248354..249352(+) (ruvB) [Streptococcus pneumoniae strain PZ900700012]
ATGAGTAGAATTTTAGATAATGAGATGATGGGTGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATTGGTCAGGATAAGGTTAAGGATCAGCTTCAGATCTTTATCGAAGCCGCTAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGCCCTCCAGGGCTTGGGAAAACAACCATGGCTTTTGTCATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCTGGTCCTGTTATCGAAAAAGCGGGTGATTTGGTAGCGATTTTGAATGAGTTAGAGCCTGGAGATGTCCT
CTTTATTGACGAGATTCATCGCTTACCCATGTCAGTGGAAGAAGTGCTTTATAGTGCCATGGAGGACTTCTACATCGATA
TTATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTGCCTCCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATCGAT
GATGTTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
CACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTGAATATCGCCGAAGAGCGTGAGACAG
TTGAAGACATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	99.699	100	0.997
ruvB	Streptococcus pneumoniae R6	99.398	100	0.994
ruvB	Streptococcus pneumoniae D39	99.398	100	0.994
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47