Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R4702_RS05320 Genome accession   NZ_CP137106
Coordinates   1046541..1046777 (-) Length   78 a.a.
NCBI ID   WP_000939544.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P4028     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1041541..1051777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS05295 - 1041565..1042635 (+) 1071 WP_000420652.1 hypothetical protein -
  R4702_RS05300 - 1043005..1044147 (+) 1143 WP_050123757.1 site-specific integrase -
  R4702_RS05310 tadA 1044356..1044823 (-) 468 WP_000291875.1 tRNA adenosine(34) deaminase TadA -
  R4702_RS05315 - 1045024..1046310 (-) 1287 WP_000205044.1 adenylosuccinate synthase -
  R4702_RS05320 comW 1046541..1046777 (-) 237 WP_000939544.1 sigma(X)-activator ComW Regulator
  R4702_RS05325 - 1047044..1048154 (+) 1111 Protein_1063 transposase -
  R4702_RS05330 - 1048189..1048398 (-) 210 Protein_1064 transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9667.10 Da        Isoelectric Point: 6.4701

>NTDB_id=819147 R4702_RS05320 WP_000939544.1 1046541..1046777(-) (comW) [Streptococcus pneumoniae strain 16P4028]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCHRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=819147 R4702_RS05320 WP_000939544.1 1046541..1046777(-) (comW) [Streptococcus pneumoniae strain 16P4028]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCATAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

97.436

100

0.974
  comW Streptococcus pneumoniae D39

97.436

100

0.974
  comW Streptococcus pneumoniae R6

97.436

100

0.974
  comW Streptococcus pneumoniae TIGR4

97.436

100

0.974
  comW Streptococcus mitis SK321

78.205

100

0.782
  comW Streptococcus mitis NCTC 12261

77.922

98.718

0.769