Detailed information
Bioinformatically predicted
Overview
| Name | comW | Type | Regulator |
| Locus tag | R8613_RS00120 | Genome accession | NZ_AP026919 |
| Coordinates | 23258..23494 (+) | Length | 78 a.a. |
| NCBI ID | WP_000939548.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain PZ900700012 | ||
| Function | stabilization and activation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 18258..28494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8613_RS00105 | - | 20283..20492 (+) | 210 | Protein_14 | transposase | - |
| R8613_RS00110 | - | 20527..21284 (-) | 758 | Protein_15 | transposase | - |
| R8613_RS00115 (PC0012_00160) | - | 21464..22810 (+) | 1347 | WP_219565756.1 | IS1380-like element ISSpn5 family transposase | - |
| R8613_RS00120 (PC0012_00170) | comW | 23258..23494 (+) | 237 | WP_000939548.1 | sigma(X)-activator ComW | Regulator |
| R8613_RS00125 (PC0012_00180) | - | 23725..25011 (+) | 1287 | WP_000205044.1 | adenylosuccinate synthase | - |
| R8613_RS00130 (PC0012_00190) | tadA | 25212..25679 (+) | 468 | WP_000291870.1 | tRNA adenosine(34) deaminase TadA | - |
| R8613_RS00140 (PC0012_00200) | - | 25865..26308 (+) | 444 | WP_000701992.1 | dUTP diphosphatase | - |
| R8613_RS00145 (PC0012_00210) | - | 26310..26825 (+) | 516 | WP_000691236.1 | histidine phosphatase family protein | - |
| R8613_RS00150 (PC0012_00220) | radA | 26839..28200 (+) | 1362 | WP_074017595.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 78 a.a. Molecular weight: 9716.17 Da Isoelectric Point: 6.7051
>NTDB_id=81909 R8613_RS00120 WP_000939548.1 23258..23494(+) (comW) [Streptococcus pneumoniae strain PZ900700012]
MLQKIYEQMTNFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC
MLQKIYEQMTNFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC
Nucleotide
Download Length: 237 bp
>NTDB_id=81909 R8613_RS00120 WP_000939548.1 23258..23494(+) (comW) [Streptococcus pneumoniae strain PZ900700012]
ATGTTACAAAAAATTTATGAGCAGATGACTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA
ATGTTACAAAAAATTTATGAGCAGATGACTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comW | Streptococcus pneumoniae Rx1 |
97.436 |
100 |
0.974 |
| comW | Streptococcus pneumoniae D39 |
97.436 |
100 |
0.974 |
| comW | Streptococcus pneumoniae R6 |
97.436 |
100 |
0.974 |
| comW | Streptococcus pneumoniae TIGR4 |
97.436 |
100 |
0.974 |
| comW | Streptococcus mitis SK321 |
76.923 |
100 |
0.769 |
| comW | Streptococcus mitis NCTC 12261 |
76.623 |
98.718 |
0.756 |