Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO18_RS13675 | Genome accession | NZ_CP123121 |
| Coordinates | 2762793..2763263 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610650.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain GE-MSSA38 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2734729..2767794 | 2762793..2763263 | within | 0 |
Gene organization within MGE regions
Location: 2734729..2767794
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO18_RS13495 (QAO18_13465) | - | 2734729..2735355 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| QAO18_RS13500 (QAO18_13470) | - | 2735552..2736811 (+) | 1260 | WP_411897008.1 | SdrH family protein | - |
| QAO18_RS13505 (QAO18_13475) | mroQ | 2736836..2737579 (-) | 744 | WP_000197645.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| QAO18_RS13510 (QAO18_13480) | groES | 2737756..2738040 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAO18_RS13515 (QAO18_13485) | groL | 2738116..2739732 (+) | 1617 | WP_000240649.1 | chaperonin GroEL | - |
| QAO18_RS13520 (QAO18_13490) | - | 2739827..2740373 (-) | 547 | Protein_2624 | site-specific integrase | - |
| QAO18_RS13525 (QAO18_13495) | - | 2740434..2740646 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| QAO18_RS13530 (QAO18_13500) | - | 2740643..2741233 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| QAO18_RS13535 (QAO18_13505) | - | 2741550..2741987 (+) | 438 | WP_072419900.1 | hypothetical protein | - |
| QAO18_RS13540 (QAO18_13510) | - | 2742093..2742536 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| QAO18_RS13545 (QAO18_13515) | - | 2743379..2744686 (-) | 1308 | WP_001045063.1 | TrkH family potassium uptake protein | - |
| QAO18_RS13550 (QAO18_13520) | - | 2744847..2745758 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| QAO18_RS13555 (QAO18_13525) | - | 2745820..2746665 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| QAO18_RS13560 (QAO18_13530) | - | 2747037..2748260 (-) | 1224 | WP_000206641.1 | ArgE/DapE family deacylase | - |
| QAO18_RS13565 (QAO18_13535) | lukH | 2748695..2749747 (+) | 1053 | WP_000791416.1 | bi-component leukocidin LukGH subunit H | - |
| QAO18_RS13570 (QAO18_13540) | lukG | 2749769..2750785 (+) | 1017 | WP_411897009.1 | bi-component leukocidin LukGH subunit G | - |
| QAO18_RS13575 (QAO18_13545) | sph | 2751023..2751847 (-) | 825 | Protein_2635 | sphingomyelin phosphodiesterase | - |
| QAO18_RS13580 (QAO18_13550) | - | 2751904..2752941 (-) | 1038 | WP_000857176.1 | tyrosine-type recombinase/integrase | - |
| QAO18_RS13585 (QAO18_13555) | - | 2753049..2753663 (+) | 615 | WP_000191460.1 | hypothetical protein | - |
| QAO18_RS13590 (QAO18_13560) | - | 2753660..2753806 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| QAO18_RS13595 (QAO18_13565) | - | 2753842..2754024 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| QAO18_RS13600 (QAO18_13570) | - | 2754224..2754994 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| QAO18_RS13605 (QAO18_13575) | - | 2755153..2755377 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| QAO18_RS13610 (QAO18_13580) | - | 2755395..2755655 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| QAO18_RS13615 (QAO18_13585) | - | 2755679..2756218 (-) | 540 | WP_411897010.1 | hypothetical protein | - |
| QAO18_RS13620 (QAO18_13590) | - | 2756275..2757027 (+) | 753 | WP_031928706.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO18_RS13625 (QAO18_13595) | - | 2757043..2757240 (+) | 198 | Protein_2645 | hypothetical protein | - |
| QAO18_RS13630 (QAO18_13600) | - | 2757271..2757411 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| QAO18_RS13635 (QAO18_13605) | - | 2757426..2758058 (-) | 633 | WP_411897011.1 | hypothetical protein | - |
| QAO18_RS13640 (QAO18_13610) | - | 2758117..2758437 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| QAO18_RS13645 (QAO18_13615) | - | 2758434..2758595 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| QAO18_RS13650 (QAO18_13620) | - | 2758688..2758948 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| QAO18_RS13655 (QAO18_13625) | - | 2758957..2759220 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAO18_RS13660 (QAO18_13630) | - | 2759229..2761172 (+) | 1944 | WP_411897012.1 | AAA family ATPase | - |
| QAO18_RS13665 (QAO18_13635) | - | 2761174..2762094 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| QAO18_RS13670 (QAO18_13640) | - | 2762175..2762792 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| QAO18_RS13675 (QAO18_13645) | ssbA | 2762793..2763263 (+) | 471 | WP_000610650.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO18_RS13680 (QAO18_13650) | - | 2763293..2764186 (+) | 894 | WP_000148335.1 | DnaD domain protein | - |
| QAO18_RS13685 (QAO18_13655) | - | 2764193..2764411 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| QAO18_RS13690 (QAO18_13660) | - | 2764420..2764824 (+) | 405 | WP_031928704.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO18_RS13695 (QAO18_13665) | - | 2764837..2765208 (+) | 372 | WP_000101268.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO18_RS13700 (QAO18_13670) | - | 2765209..2765457 (+) | 249 | WP_001126836.1 | phi PVL orf 51-like protein | - |
| QAO18_RS13705 (QAO18_13675) | - | 2765522..2765971 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| QAO18_RS13710 (QAO18_13680) | - | 2766025..2766252 (+) | 228 | Protein_2662 | hypothetical protein | - |
| QAO18_RS13715 (QAO18_13685) | - | 2766245..2766499 (+) | 255 | WP_000370292.1 | DUF1024 family protein | - |
| QAO18_RS13720 (QAO18_13690) | - | 2766619..2766819 (+) | 201 | WP_000265042.1 | DUF1514 family protein | - |
| QAO18_RS13725 (QAO18_13695) | - | 2766847..2767263 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAO18_RS13730 (QAO18_13700) | - | 2767495..2767794 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17658.50 Da Isoelectric Point: 4.9628
>NTDB_id=819088 QAO18_RS13675 WP_000610650.1 2762793..2763263(+) (ssbA) [Staphylococcus aureus strain GE-MSSA38]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=819088 QAO18_RS13675 WP_000610650.1 2762793..2763263(+) (ssbA) [Staphylococcus aureus strain GE-MSSA38]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAATCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAATCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |