Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QAO18_RS13465 Genome accession   NZ_CP123121
Coordinates   2729947..2730663 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain GE-MSSA38     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2724947..2735663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO18_RS13445 (QAO18_13415) - 2726040..2726990 (+) 951 WP_000790322.1 LacI family DNA-binding transcriptional regulator -
  QAO18_RS13450 (QAO18_13420) - 2727139..2728623 (+) 1485 WP_000141410.1 sucrose-6-phosphate hydrolase -
  QAO18_RS13455 (QAO18_13425) - 2728620..2729579 (+) 960 WP_001253301.1 carbohydrate kinase family protein -
  QAO18_RS13460 (QAO18_13430) - 2729768..2729875 (-) 108 WP_031789494.1 hypothetical protein -
  QAO18_RS13465 (QAO18_13435) agrA 2729947..2730663 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  QAO18_RS13470 (QAO18_13440) agrC 2730682..2731974 (-) 1293 WP_001670396.1 quorum-sensing sensor histidine kinase AgrC -
  QAO18_RS13475 (QAO18_13445) agrD 2731999..2732139 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  QAO18_RS13480 (QAO18_13450) agrB 2732136..2732705 (-) 570 WP_001105713.1 accessory gene regulator AgrB -
  QAO18_RS13485 hld 2732995..2733075 (+) 81 WP_000046022.1 delta-hemolysin -
  QAO18_RS13490 (QAO18_13460) - 2733674..2734459 (-) 786 WP_000867943.1 carbon-nitrogen family hydrolase -
  QAO18_RS13495 (QAO18_13465) - 2734729..2735355 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=819087 QAO18_RS13465 WP_000688492.1 2729947..2730663(-) (agrA) [Staphylococcus aureus strain GE-MSSA38]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=819087 QAO18_RS13465 WP_000688492.1 2729947..2730663(-) (agrA) [Staphylococcus aureus strain GE-MSSA38]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATCCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCATAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACACGTATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATCGAATCTATAG
ATTCGAAAGAGCGCATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1