Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R4699_RS09110 Genome accession   NZ_CP137105
Coordinates   1806075..1806311 (-) Length   78 a.a.
NCBI ID   WP_000939544.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2092     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801075..1811311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4699_RS09080 radA 1801368..1802729 (-) 1362 WP_074017595.1 DNA repair protein RadA Machinery gene
  R4699_RS09085 - 1802743..1803258 (-) 516 WP_000691236.1 histidine phosphatase family protein -
  R4699_RS09090 - 1803260..1803703 (-) 444 WP_000701992.1 dUTP diphosphatase -
  R4699_RS09100 tadA 1803890..1804357 (-) 468 WP_000291870.1 tRNA adenosine(34) deaminase TadA -
  R4699_RS09105 - 1804558..1805844 (-) 1287 WP_000205044.1 adenylosuccinate synthase -
  R4699_RS09110 comW 1806075..1806311 (-) 237 WP_000939544.1 sigma(X)-activator ComW Regulator
  R4699_RS09115 - 1806577..1807374 (+) 798 Protein_1791 transposase -
  R4699_RS09120 - 1807409..1808259 (-) 851 Protein_1792 IS630 family transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9667.10 Da        Isoelectric Point: 6.4701

>NTDB_id=819064 R4699_RS09110 WP_000939544.1 1806075..1806311(-) (comW) [Streptococcus pneumoniae strain 16H2092]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCHRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=819064 R4699_RS09110 WP_000939544.1 1806075..1806311(-) (comW) [Streptococcus pneumoniae strain 16H2092]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCATAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

97.436

100

0.974
  comW Streptococcus pneumoniae D39

97.436

100

0.974
  comW Streptococcus pneumoniae R6

97.436

100

0.974
  comW Streptococcus pneumoniae TIGR4

97.436

100

0.974
  comW Streptococcus mitis SK321

78.205

100

0.782
  comW Streptococcus mitis NCTC 12261

77.922

98.718

0.769