Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO34_RS14000 | Genome accession | NZ_CP123112 |
| Coordinates | 2813476..2813946 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610647.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain IT-MSSA46 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2784836..2820626 | 2813476..2813946 | within | 0 |
Gene organization within MGE regions
Location: 2784836..2820626
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO34_RS13810 (QAO34_13785) | - | 2784836..2785462 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| QAO34_RS13815 (QAO34_13790) | - | 2785659..2786918 (+) | 1260 | WP_000120317.1 | SdrH family protein | - |
| QAO34_RS13820 (QAO34_13795) | mroQ | 2786942..2787685 (-) | 744 | WP_000197645.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| QAO34_RS13825 (QAO34_13800) | groES | 2787862..2788146 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAO34_RS13830 (QAO34_13805) | groL | 2788222..2789838 (+) | 1617 | WP_000240649.1 | chaperonin GroEL | - |
| QAO34_RS13835 (QAO34_13810) | - | 2789933..2790479 (-) | 547 | Protein_2684 | site-specific integrase | - |
| QAO34_RS13840 (QAO34_13815) | - | 2790540..2790752 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| QAO34_RS13845 (QAO34_13820) | - | 2790749..2791339 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| QAO34_RS13850 (QAO34_13825) | - | 2791656..2792093 (+) | 438 | WP_075583719.1 | hypothetical protein | - |
| QAO34_RS13855 (QAO34_13830) | - | 2792199..2792642 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| QAO34_RS13860 (QAO34_13835) | - | 2793485..2794792 (-) | 1308 | WP_001045063.1 | TrkH family potassium uptake protein | - |
| QAO34_RS13865 (QAO34_13840) | - | 2794953..2795864 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| QAO34_RS13870 (QAO34_13845) | - | 2795926..2796771 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| QAO34_RS13875 (QAO34_13850) | - | 2797143..2798366 (-) | 1224 | WP_000206641.1 | ArgE/DapE family deacylase | - |
| QAO34_RS13880 (QAO34_13855) | lukH | 2798801..2799853 (+) | 1053 | WP_000791416.1 | bi-component leukocidin LukGH subunit H | - |
| QAO34_RS13885 (QAO34_13860) | lukG | 2799875..2800891 (+) | 1017 | WP_000595402.1 | bi-component leukocidin LukGH subunit G | - |
| QAO34_RS13890 (QAO34_13865) | sph | 2801129..2801953 (-) | 825 | Protein_2695 | sphingomyelin phosphodiesterase | - |
| QAO34_RS13895 (QAO34_13870) | - | 2802010..2803047 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| QAO34_RS13900 (QAO34_13875) | - | 2803238..2803951 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAO34_RS13905 (QAO34_13880) | - | 2804029..2804211 (-) | 183 | WP_000705236.1 | hypothetical protein | - |
| QAO34_RS13910 (QAO34_13885) | - | 2804282..2804467 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| QAO34_RS13915 (QAO34_13890) | - | 2804464..2804610 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| QAO34_RS13920 (QAO34_13895) | - | 2804684..2805538 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| QAO34_RS13925 (QAO34_13900) | - | 2805550..2806266 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| QAO34_RS13930 (QAO34_13905) | - | 2806430..2806672 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| QAO34_RS13935 (QAO34_13910) | - | 2806685..2807131 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| QAO34_RS13940 (QAO34_13915) | - | 2807146..2807286 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| QAO34_RS13945 (QAO34_13920) | - | 2807279..2807488 (-) | 210 | WP_411888635.1 | hypothetical protein | - |
| QAO34_RS13950 (QAO34_13925) | - | 2807545..2808294 (+) | 750 | WP_001148590.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO34_RS13955 (QAO34_13930) | - | 2808307..2808567 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| QAO34_RS13960 (QAO34_13935) | - | 2808591..2808746 (-) | 156 | Protein_2709 | hypothetical protein | - |
| QAO34_RS13965 (QAO34_13940) | - | 2808800..2809120 (+) | 321 | WP_001120936.1 | DUF771 domain-containing protein | - |
| QAO34_RS13970 (QAO34_13945) | - | 2809117..2809278 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| QAO34_RS13975 (QAO34_13950) | - | 2809371..2809631 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| QAO34_RS13980 (QAO34_13955) | - | 2809640..2809903 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAO34_RS13985 (QAO34_13960) | - | 2809912..2811855 (+) | 1944 | WP_000700571.1 | AAA family ATPase | - |
| QAO34_RS13990 (QAO34_13965) | - | 2811857..2812777 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| QAO34_RS13995 (QAO34_13970) | - | 2812858..2813475 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| QAO34_RS14000 (QAO34_13975) | ssbA | 2813476..2813946 (+) | 471 | WP_000610647.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO34_RS14005 (QAO34_13980) | - | 2813976..2814860 (+) | 885 | WP_000148299.1 | DnaD domain protein | - |
| QAO34_RS14010 (QAO34_13985) | - | 2814867..2815085 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAO34_RS14015 (QAO34_13990) | - | 2815094..2815498 (+) | 405 | WP_000401966.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO34_RS14020 (QAO34_13995) | - | 2815511..2815879 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO34_RS14025 (QAO34_14000) | - | 2815883..2816125 (+) | 243 | WP_000131377.1 | phi PVL orf 51-like protein | - |
| QAO34_RS14030 (QAO34_14005) | - | 2816139..2816525 (+) | 387 | WP_000693615.1 | hypothetical protein | - |
| QAO34_RS14035 (QAO34_14010) | - | 2816522..2816716 (+) | 195 | WP_000983954.1 | hypothetical protein | - |
| QAO34_RS14040 (QAO34_14015) | - | 2816713..2817162 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| QAO34_RS14045 (QAO34_14020) | - | 2817159..2817443 (+) | 285 | WP_001105621.1 | hypothetical protein | - |
| QAO34_RS14050 (QAO34_14025) | - | 2817436..2817690 (+) | 255 | WP_001065084.1 | DUF1024 family protein | - |
| QAO34_RS14055 (QAO34_14030) | - | 2817677..2817847 (+) | 171 | WP_000714409.1 | hypothetical protein | - |
| QAO34_RS14060 (QAO34_14035) | - | 2817840..2818373 (+) | 534 | WP_000185642.1 | dUTP diphosphatase | - |
| QAO34_RS14065 (QAO34_14040) | - | 2818410..2818697 (+) | 288 | WP_000195809.1 | DUF1381 domain-containing protein | - |
| QAO34_RS14070 (QAO34_14045) | - | 2818690..2818926 (+) | 237 | WP_000608280.1 | hypothetical protein | - |
| QAO34_RS14075 (QAO34_14050) | - | 2818916..2819305 (+) | 390 | WP_170267442.1 | hypothetical protein | - |
| QAO34_RS14080 (QAO34_14055) | rinB | 2819302..2819451 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAO34_RS14085 (QAO34_14060) | - | 2819451..2819651 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QAO34_RS14090 (QAO34_14065) | - | 2819679..2820095 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAO34_RS14095 (QAO34_14070) | - | 2820327..2820626 (+) | 300 | WP_000988333.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=818963 QAO34_RS14000 WP_000610647.1 2813476..2813946(+) (ssbA) [Staphylococcus aureus strain IT-MSSA46]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=818963 QAO34_RS14000 WP_000610647.1 2813476..2813946(+) (ssbA) [Staphylococcus aureus strain IT-MSSA46]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |