Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   R4708_RS06910 Genome accession   NZ_CP137104
Coordinates   1349709..1350608 (+) Length   299 a.a.
NCBI ID   WP_000904848.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LM     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1344709..1355608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4708_RS06880 - 1344881..1345173 (+) 293 Protein_1333 hypothetical protein -
  R4708_RS06885 - 1345329..1346543 (+) 1215 WP_000666484.1 pyridoxal phosphate-dependent aminotransferase -
  R4708_RS06890 rpmH 1346688..1346822 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  R4708_RS06895 - 1347028..1347999 (+) 972 Protein_1336 DUF1542 domain-containing protein -
  R4708_RS06900 - 1348304..1349077 (+) 774 WP_000575650.1 TatD family hydrolase -
  R4708_RS06905 rnmV 1349077..1349637 (+) 561 WP_000660013.1 ribonuclease M5 -
  R4708_RS06910 comR 1349709..1350608 (+) 900 WP_000904848.1 helix-turn-helix transcriptional regulator Regulator
  R4708_RS06915 - 1350876..1352906 (+) 2031 WP_000825271.1 bacteriocin-associated integral membrane family protein -
  R4708_RS06920 - 1352908..1353549 (+) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  R4708_RS06925 - 1353542..1353835 (+) 294 Protein_1342 hypothetical protein -
  R4708_RS06930 rsmA 1354086..1354958 (+) 873 WP_001216856.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35420.14 Da        Isoelectric Point: 4.6674

>NTDB_id=818935 R4708_RS06910 WP_000904848.1 1349709..1350608(+) (comR) [Streptococcus pneumoniae strain LM]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEELMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=818935 R4708_RS06910 WP_000904848.1 1349709..1350608(+) (comR) [Streptococcus pneumoniae strain LM]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATATCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAGAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus pyogenes MGAS8232

36.577

99.666

0.365
  comR Streptococcus pyogenes MGAS315

36

100

0.361
  comR Streptococcus suis P1/7

37.113

97.324

0.361
  comR Streptococcus suis 05ZYH33

37.113

97.324

0.361