Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO38_RS14085 | Genome accession | NZ_CP123110 |
| Coordinates | 2833544..2834014 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610647.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain IT-MSSA47 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2804904..2840694 | 2833544..2834014 | within | 0 |
Gene organization within MGE regions
Location: 2804904..2840694
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO38_RS13895 (QAO38_13880) | - | 2804904..2805530 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| QAO38_RS13900 (QAO38_13885) | - | 2805727..2806986 (+) | 1260 | WP_041525320.1 | SdrH family protein | - |
| QAO38_RS13905 (QAO38_13890) | mroQ | 2807010..2807753 (-) | 744 | WP_000197645.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| QAO38_RS13910 (QAO38_13895) | groES | 2807930..2808214 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAO38_RS13915 (QAO38_13900) | groL | 2808290..2809906 (+) | 1617 | WP_000240649.1 | chaperonin GroEL | - |
| QAO38_RS13920 (QAO38_13905) | - | 2810001..2810547 (-) | 547 | Protein_2704 | site-specific integrase | - |
| QAO38_RS13925 (QAO38_13910) | - | 2810608..2810820 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| QAO38_RS13930 (QAO38_13915) | - | 2810817..2811407 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| QAO38_RS13935 (QAO38_13920) | - | 2811724..2812161 (+) | 438 | WP_075583719.1 | hypothetical protein | - |
| QAO38_RS13940 (QAO38_13925) | - | 2812267..2812710 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| QAO38_RS13945 (QAO38_13930) | - | 2813553..2814860 (-) | 1308 | WP_001045063.1 | TrkH family potassium uptake protein | - |
| QAO38_RS13950 (QAO38_13935) | - | 2815021..2815932 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| QAO38_RS13955 (QAO38_13940) | - | 2815994..2816839 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| QAO38_RS13960 (QAO38_13945) | - | 2817211..2818434 (-) | 1224 | WP_000206641.1 | ArgE/DapE family deacylase | - |
| QAO38_RS13965 (QAO38_13950) | lukH | 2818869..2819921 (+) | 1053 | WP_000791416.1 | bi-component leukocidin LukGH subunit H | - |
| QAO38_RS13970 (QAO38_13955) | lukG | 2819943..2820959 (+) | 1017 | WP_000595402.1 | bi-component leukocidin LukGH subunit G | - |
| QAO38_RS13975 (QAO38_13960) | sph | 2821197..2822021 (-) | 825 | Protein_2715 | sphingomyelin phosphodiesterase | - |
| QAO38_RS13980 (QAO38_13965) | - | 2822078..2823115 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| QAO38_RS13985 (QAO38_13970) | - | 2823306..2824019 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAO38_RS13990 (QAO38_13975) | - | 2824097..2824279 (-) | 183 | WP_000705236.1 | hypothetical protein | - |
| QAO38_RS13995 (QAO38_13980) | - | 2824350..2824535 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| QAO38_RS14000 (QAO38_13985) | - | 2824532..2824678 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| QAO38_RS14005 (QAO38_13990) | - | 2824752..2825606 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| QAO38_RS14010 (QAO38_13995) | - | 2825618..2826334 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| QAO38_RS14015 (QAO38_14000) | - | 2826498..2826740 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| QAO38_RS14020 (QAO38_14005) | - | 2826753..2827199 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| QAO38_RS14025 (QAO38_14010) | - | 2827214..2827354 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| QAO38_RS14030 (QAO38_14015) | - | 2827347..2827556 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| QAO38_RS14035 (QAO38_14020) | - | 2827613..2828362 (+) | 750 | WP_001148590.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO38_RS14040 (QAO38_14025) | - | 2828375..2828635 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| QAO38_RS14045 (QAO38_14030) | - | 2828659..2828814 (-) | 156 | Protein_2729 | hypothetical protein | - |
| QAO38_RS14050 (QAO38_14035) | - | 2828868..2829188 (+) | 321 | WP_001120936.1 | DUF771 domain-containing protein | - |
| QAO38_RS14055 (QAO38_14040) | - | 2829185..2829346 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| QAO38_RS14060 (QAO38_14045) | - | 2829439..2829699 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| QAO38_RS14065 (QAO38_14050) | - | 2829708..2829971 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAO38_RS14070 (QAO38_14055) | - | 2829980..2831923 (+) | 1944 | WP_000700571.1 | AAA family ATPase | - |
| QAO38_RS14075 (QAO38_14060) | - | 2831925..2832845 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| QAO38_RS14080 (QAO38_14065) | - | 2832926..2833543 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| QAO38_RS14085 (QAO38_14070) | ssbA | 2833544..2834014 (+) | 471 | WP_000610647.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO38_RS14090 (QAO38_14075) | - | 2834044..2834928 (+) | 885 | WP_000148299.1 | DnaD domain protein | - |
| QAO38_RS14095 (QAO38_14080) | - | 2834935..2835153 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAO38_RS14100 (QAO38_14085) | - | 2835162..2835566 (+) | 405 | WP_000401966.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO38_RS14105 (QAO38_14090) | - | 2835579..2835947 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO38_RS14110 (QAO38_14095) | - | 2835951..2836193 (+) | 243 | WP_000131377.1 | phi PVL orf 51-like protein | - |
| QAO38_RS14115 (QAO38_14100) | - | 2836207..2836593 (+) | 387 | WP_000693615.1 | hypothetical protein | - |
| QAO38_RS14120 (QAO38_14105) | - | 2836590..2836784 (+) | 195 | WP_000983954.1 | hypothetical protein | - |
| QAO38_RS14125 (QAO38_14110) | - | 2836781..2837230 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| QAO38_RS14130 (QAO38_14115) | - | 2837227..2837511 (+) | 285 | WP_001105621.1 | hypothetical protein | - |
| QAO38_RS14135 (QAO38_14120) | - | 2837504..2837758 (+) | 255 | WP_001065084.1 | DUF1024 family protein | - |
| QAO38_RS14140 (QAO38_14125) | - | 2837745..2837915 (+) | 171 | WP_000714409.1 | hypothetical protein | - |
| QAO38_RS14145 (QAO38_14130) | - | 2837908..2838441 (+) | 534 | WP_000185642.1 | dUTP diphosphatase | - |
| QAO38_RS14150 (QAO38_14135) | - | 2838478..2838765 (+) | 288 | WP_000195809.1 | DUF1381 domain-containing protein | - |
| QAO38_RS14155 (QAO38_14140) | - | 2838758..2838994 (+) | 237 | WP_000608280.1 | hypothetical protein | - |
| QAO38_RS14160 (QAO38_14145) | - | 2838984..2839373 (+) | 390 | WP_170267442.1 | hypothetical protein | - |
| QAO38_RS14165 (QAO38_14150) | rinB | 2839370..2839519 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAO38_RS14170 (QAO38_14155) | - | 2839519..2839719 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QAO38_RS14175 (QAO38_14160) | - | 2839747..2840163 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAO38_RS14180 (QAO38_14165) | - | 2840395..2840694 (+) | 300 | WP_000988333.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=818920 QAO38_RS14085 WP_000610647.1 2833544..2834014(+) (ssbA) [Staphylococcus aureus strain IT-MSSA47]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=818920 QAO38_RS14085 WP_000610647.1 2833544..2834014(+) (ssbA) [Staphylococcus aureus strain IT-MSSA47]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |