Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAY65_RS13325 | Genome accession | NZ_CP123102 |
| Coordinates | 2718916..2719386 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain IT-MSSA54 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2694551..2724432 | 2718916..2719386 | within | 0 |
Gene organization within MGE regions
Location: 2694551..2724432
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAY65_RS13165 (QAY65_13200) | - | 2694551..2695177 (-) | 627 | WP_000522381.1 | nitroreductase family protein | - |
| QAY65_RS13170 (QAY65_13205) | - | 2695374..2696633 (+) | 1260 | WP_000120297.1 | SdrH family protein | - |
| QAY65_RS13175 (QAY65_13210) | mroQ | 2696658..2697401 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| QAY65_RS13180 (QAY65_13215) | groES | 2697576..2697860 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAY65_RS13185 (QAY65_13220) | groL | 2697936..2699552 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| QAY65_RS13190 (QAY65_13225) | - | 2700092..2701399 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| QAY65_RS13195 (QAY65_13230) | - | 2701843..2703066 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| QAY65_RS13200 (QAY65_13235) | lukH | 2703502..2704557 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| QAY65_RS13205 (QAY65_13240) | lukG | 2704579..2705595 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| QAY65_RS13210 (QAY65_13245) | sph | 2705833..2706657 (-) | 825 | Protein_2559 | sphingomyelin phosphodiesterase | - |
| QAY65_RS13215 (QAY65_13250) | - | 2706714..2707751 (-) | 1038 | WP_000857180.1 | tyrosine-type recombinase/integrase | - |
| QAY65_RS13220 (QAY65_13255) | - | 2707814..2708056 (-) | 243 | WP_411904624.1 | hypothetical protein | - |
| QAY65_RS13225 (QAY65_13260) | - | 2708067..2709050 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| QAY65_RS13230 (QAY65_13265) | - | 2709150..2709332 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| QAY65_RS13235 (QAY65_13270) | - | 2709536..2709877 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| QAY65_RS13240 (QAY65_13275) | - | 2709883..2710815 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| QAY65_RS13245 (QAY65_13280) | - | 2710831..2711544 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| QAY65_RS13250 (QAY65_13285) | - | 2711507..2711681 (+) | 175 | Protein_2567 | transcriptional regulator | - |
| QAY65_RS13255 (QAY65_13290) | - | 2711678..2711941 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| QAY65_RS13260 (QAY65_13295) | - | 2711957..2712172 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| QAY65_RS13265 (QAY65_13300) | - | 2712161..2712490 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| QAY65_RS13270 (QAY65_13305) | - | 2712541..2713293 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| QAY65_RS13275 (QAY65_13310) | - | 2713309..2713506 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| QAY65_RS13280 (QAY65_13315) | - | 2713493..2713873 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| QAY65_RS13285 (QAY65_13320) | - | 2713928..2714251 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| QAY65_RS13290 (QAY65_13325) | - | 2714248..2714409 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| QAY65_RS13295 (QAY65_13330) | - | 2714504..2714806 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| QAY65_RS13300 (QAY65_13335) | - | 2714811..2715071 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| QAY65_RS13305 (QAY65_13340) | - | 2715080..2715343 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAY65_RS13310 (QAY65_13345) | - | 2715352..2717295 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| QAY65_RS13315 (QAY65_13350) | - | 2717297..2718217 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| QAY65_RS13320 (QAY65_13355) | - | 2718298..2718915 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| QAY65_RS13325 (QAY65_13360) | ssbA | 2718916..2719386 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| QAY65_RS13330 (QAY65_13365) | - | 2719416..2720309 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| QAY65_RS13335 (QAY65_13370) | - | 2720316..2720534 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAY65_RS13340 (QAY65_13375) | - | 2720543..2720947 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAY65_RS13345 (QAY65_13380) | - | 2720960..2721331 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAY65_RS13350 (QAY65_13385) | - | 2721331..2721588 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| QAY65_RS13355 (QAY65_13390) | - | 2721591..2721833 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| QAY65_RS13360 (QAY65_13395) | - | 2721848..2722093 (+) | 246 | WP_411904625.1 | DUF1024 family protein | - |
| QAY65_RS13365 (QAY65_13400) | - | 2722090..2722626 (+) | 537 | WP_000185693.1 | dUTPase | - |
| QAY65_RS13370 (QAY65_13405) | - | 2722663..2722908 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| QAY65_RS13375 (QAY65_13410) | - | 2722905..2723111 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| QAY65_RS13380 (QAY65_13415) | rinB | 2723108..2723257 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAY65_RS13385 (QAY65_13420) | - | 2723257..2723457 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| QAY65_RS13390 (QAY65_13425) | - | 2723485..2723901 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAY65_RS13395 (QAY65_13430) | - | 2724133..2724432 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=818751 QAY65_RS13325 WP_000934759.1 2718916..2719386(+) (ssbA) [Staphylococcus aureus strain IT-MSSA54]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=818751 QAY65_RS13325 WP_000934759.1 2718916..2719386(+) (ssbA) [Staphylococcus aureus strain IT-MSSA54]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |