Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R4710_RS05815 Genome accession   NZ_CP137101
Coordinates   1096405..1096641 (+) Length   78 a.a.
NCBI ID   WP_317804167.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091405..1101641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS05805 - 1094784..1094993 (+) 210 Protein_1096 transposase -
  R4710_RS05810 - 1095028..1096138 (-) 1111 Protein_1097 transposase -
  R4710_RS05815 comW 1096405..1096641 (+) 237 WP_317804167.1 sigma(X)-activator ComW Regulator
  R4710_RS05820 - 1096872..1098158 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  R4710_RS05825 - 1098400..1099548 (-) 1149 WP_000876727.1 site-specific integrase -
  R4710_RS05830 - 1099737..1100660 (-) 924 WP_000122589.1 exonuclease domain-containing protein -
  R4710_RS05835 - 1100673..1101056 (-) 384 WP_000136455.1 ImmA/IrrE family metallo-endopeptidase -
  R4710_RS05840 - 1101069..1101431 (-) 363 WP_000466344.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9594.04 Da        Isoelectric Point: 6.4701

>NTDB_id=818581 R4710_RS05815 WP_317804167.1 1096405..1096641(+) (comW) [Streptococcus pneumoniae strain 16P2012-2]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDLEHVHFKFLIYYLVRYGIGCHRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=818581 R4710_RS05815 WP_317804167.1 1096405..1096641(+) (comW) [Streptococcus pneumoniae strain 16P2012-2]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTTGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCATAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

96.154

100

0.962
  comW Streptococcus pneumoniae D39

96.154

100

0.962
  comW Streptococcus pneumoniae R6

96.154

100

0.962
  comW Streptococcus pneumoniae TIGR4

96.154

100

0.962
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756