Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAY74_RS13980 | Genome accession | NZ_CP123093 |
| Coordinates | 2813299..2813769 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610647.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain MRSA-EDCC5443 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2784670..2820482 | 2813299..2813769 | within | 0 |
Gene organization within MGE regions
Location: 2784670..2820482
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAY74_RS13790 (QAY74_13775) | - | 2784670..2785296 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| QAY74_RS13795 (QAY74_13780) | - | 2785493..2786740 (+) | 1248 | WP_052997535.1 | SdrH family protein | - |
| QAY74_RS13800 (QAY74_13785) | mroQ | 2786764..2787507 (-) | 744 | WP_000197645.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| QAY74_RS13805 (QAY74_13790) | groES | 2787684..2787968 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAY74_RS13810 (QAY74_13795) | groL | 2788044..2789660 (+) | 1617 | WP_000240649.1 | chaperonin GroEL | - |
| QAY74_RS13815 (QAY74_13800) | - | 2789755..2790301 (-) | 547 | Protein_2683 | site-specific integrase | - |
| QAY74_RS13820 (QAY74_13805) | - | 2790362..2790574 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| QAY74_RS13825 (QAY74_13810) | - | 2790571..2791161 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| QAY74_RS13830 (QAY74_13815) | - | 2791478..2791915 (+) | 438 | WP_075583719.1 | hypothetical protein | - |
| QAY74_RS13835 (QAY74_13820) | - | 2792021..2792464 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| QAY74_RS13840 (QAY74_13825) | - | 2793307..2794614 (-) | 1308 | WP_001045063.1 | TrkH family potassium uptake protein | - |
| QAY74_RS13845 (QAY74_13830) | - | 2794775..2795686 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| QAY74_RS13850 (QAY74_13835) | - | 2795748..2796593 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| QAY74_RS13855 (QAY74_13840) | - | 2796965..2798188 (-) | 1224 | WP_000206641.1 | ArgE/DapE family deacylase | - |
| QAY74_RS13860 (QAY74_13845) | lukH | 2798623..2799675 (+) | 1053 | WP_000791416.1 | bi-component leukocidin LukGH subunit H | - |
| QAY74_RS13865 (QAY74_13850) | lukG | 2799697..2800713 (+) | 1017 | WP_000595402.1 | bi-component leukocidin LukGH subunit G | - |
| QAY74_RS13870 (QAY74_13855) | sph | 2800951..2801779 (-) | 829 | Protein_2694 | sphingomyelin phosphodiesterase | - |
| QAY74_RS13875 (QAY74_13860) | - | 2801833..2802870 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| QAY74_RS13880 (QAY74_13865) | - | 2803061..2803774 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAY74_RS13885 (QAY74_13870) | - | 2803852..2804034 (-) | 183 | WP_000705236.1 | hypothetical protein | - |
| QAY74_RS13890 (QAY74_13875) | - | 2804105..2804290 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| QAY74_RS13895 (QAY74_13880) | - | 2804287..2804433 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| QAY74_RS13900 (QAY74_13885) | - | 2804507..2805361 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| QAY74_RS13905 (QAY74_13890) | - | 2805373..2806089 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| QAY74_RS13910 (QAY74_13895) | - | 2806253..2806495 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| QAY74_RS13915 (QAY74_13900) | - | 2806508..2806954 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| QAY74_RS13920 (QAY74_13905) | - | 2806969..2807109 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| QAY74_RS13925 (QAY74_13910) | - | 2807102..2807311 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| QAY74_RS13930 (QAY74_13915) | - | 2807368..2808117 (+) | 750 | WP_001148590.1 | phage antirepressor KilAC domain-containing protein | - |
| QAY74_RS13935 (QAY74_13920) | - | 2808130..2808390 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| QAY74_RS13940 (QAY74_13925) | - | 2808414..2808569 (-) | 156 | Protein_2708 | hypothetical protein | - |
| QAY74_RS13945 (QAY74_13930) | - | 2808623..2808943 (+) | 321 | WP_001120936.1 | DUF771 domain-containing protein | - |
| QAY74_RS13950 (QAY74_13935) | - | 2808940..2809101 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| QAY74_RS13955 (QAY74_13940) | - | 2809194..2809454 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| QAY74_RS13960 (QAY74_13945) | - | 2809463..2809726 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAY74_RS13965 (QAY74_13950) | - | 2809735..2811678 (+) | 1944 | WP_000700571.1 | AAA family ATPase | - |
| QAY74_RS13970 (QAY74_13955) | - | 2811680..2812600 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| QAY74_RS13975 (QAY74_13960) | - | 2812681..2813298 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| QAY74_RS13980 (QAY74_13965) | ssbA | 2813299..2813769 (+) | 471 | WP_000610647.1 | single-stranded DNA-binding protein | Machinery gene |
| QAY74_RS13985 (QAY74_13970) | - | 2813799..2814716 (+) | 918 | WP_041497902.1 | DnaD domain protein | - |
| QAY74_RS13990 (QAY74_13975) | - | 2814723..2814941 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAY74_RS13995 (QAY74_13980) | - | 2814950..2815354 (+) | 405 | WP_000401966.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAY74_RS14000 (QAY74_13985) | - | 2815367..2815735 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAY74_RS14005 (QAY74_13990) | - | 2815739..2815981 (+) | 243 | WP_000131377.1 | phi PVL orf 51-like protein | - |
| QAY74_RS14010 (QAY74_13995) | - | 2815995..2816381 (+) | 387 | WP_000693615.1 | hypothetical protein | - |
| QAY74_RS14015 (QAY74_14000) | - | 2816378..2816572 (+) | 195 | WP_000983954.1 | hypothetical protein | - |
| QAY74_RS14020 (QAY74_14005) | - | 2816569..2817018 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| QAY74_RS14025 (QAY74_14010) | - | 2817015..2817299 (+) | 285 | WP_001105621.1 | hypothetical protein | - |
| QAY74_RS14030 (QAY74_14015) | - | 2817292..2817546 (+) | 255 | WP_001065084.1 | DUF1024 family protein | - |
| QAY74_RS14035 (QAY74_14020) | - | 2817533..2817703 (+) | 171 | WP_000714409.1 | hypothetical protein | - |
| QAY74_RS14040 (QAY74_14025) | - | 2817696..2818229 (+) | 534 | WP_000185642.1 | dUTP diphosphatase | - |
| QAY74_RS14045 (QAY74_14030) | - | 2818266..2818553 (+) | 288 | WP_000195809.1 | DUF1381 domain-containing protein | - |
| QAY74_RS14050 (QAY74_14035) | - | 2818546..2818782 (+) | 237 | WP_000608280.1 | hypothetical protein | - |
| QAY74_RS14055 (QAY74_14040) | - | 2818772..2819161 (+) | 390 | WP_170267442.1 | hypothetical protein | - |
| QAY74_RS14060 (QAY74_14045) | rinB | 2819158..2819307 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAY74_RS14065 (QAY74_14050) | - | 2819307..2819507 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QAY74_RS14070 (QAY74_14055) | - | 2819535..2819951 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAY74_RS14075 (QAY74_14060) | - | 2820183..2820482 (+) | 300 | WP_000988333.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=818581 QAY74_RS13980 WP_000610647.1 2813299..2813769(+) (ssbA) [Staphylococcus aureus strain MRSA-EDCC5443]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=818581 QAY74_RS13980 WP_000610647.1 2813299..2813769(+) (ssbA) [Staphylococcus aureus strain MRSA-EDCC5443]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |