Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO27_RS13675 | Genome accession | NZ_CP123086 |
| Coordinates | 2755010..2755480 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934764.1 | Uniprot ID | A0A9P4DKA4 |
| Organism | Staphylococcus aureus strain MSSA-ATCC29213 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2738262..2760641 | 2755010..2755480 | within | 0 |
Gene organization within MGE regions
Location: 2738262..2760641
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO27_RS13545 (QAO27_13545) | - | 2738262..2739485 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| QAO27_RS13550 (QAO27_13550) | lukH | 2739921..2740976 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| QAO27_RS13555 (QAO27_13555) | lukG | 2740998..2742014 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| QAO27_RS13560 (QAO27_13560) | sph | 2742252..2743076 (-) | 825 | Protein_2629 | sphingomyelin phosphodiesterase | - |
| QAO27_RS13565 (QAO27_13565) | - | 2743133..2744170 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| QAO27_RS13570 (QAO27_13570) | - | 2744229..2744693 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| QAO27_RS13575 (QAO27_13575) | - | 2744793..2744975 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| QAO27_RS13580 (QAO27_13580) | - | 2745179..2745520 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| QAO27_RS13585 (QAO27_13585) | - | 2745526..2746458 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| QAO27_RS13590 (QAO27_13590) | - | 2746474..2747187 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| QAO27_RS13595 (QAO27_13595) | - | 2747150..2747323 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| QAO27_RS13600 (QAO27_13600) | - | 2747320..2747583 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| QAO27_RS13605 (QAO27_13605) | - | 2747599..2747814 (+) | 216 | WP_001025874.1 | MW1434 family type I TA system toxin | - |
| QAO27_RS13610 (QAO27_13610) | - | 2747803..2748132 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| QAO27_RS13615 (QAO27_13615) | - | 2748183..2748935 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO27_RS13620 (QAO27_13620) | - | 2748951..2749148 (+) | 198 | WP_001148855.1 | hypothetical protein | - |
| QAO27_RS13625 (QAO27_13625) | - | 2749179..2749319 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| QAO27_RS13630 (QAO27_13630) | - | 2749334..2749966 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| QAO27_RS13635 (QAO27_13635) | - | 2750025..2750345 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| QAO27_RS13640 (QAO27_13640) | - | 2750342..2750503 (+) | 162 | WP_000066017.1 | DUF1270 domain-containing protein | - |
| QAO27_RS13645 (QAO27_13645) | - | 2750598..2750924 (+) | 327 | WP_000165375.1 | DUF2482 family protein | - |
| QAO27_RS13650 (QAO27_13650) | - | 2750905..2751165 (+) | 261 | WP_000291503.1 | DUF1108 family protein | - |
| QAO27_RS13655 (QAO27_13655) | - | 2751174..2751437 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAO27_RS13660 (QAO27_13660) | - | 2751446..2753389 (+) | 1944 | WP_000700577.1 | AAA family ATPase | - |
| QAO27_RS13665 (QAO27_13665) | - | 2753391..2754311 (+) | 921 | WP_000138472.1 | recombinase RecT | - |
| QAO27_RS13670 (QAO27_13670) | - | 2754392..2755009 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| QAO27_RS13675 (QAO27_13675) | ssbA | 2755010..2755480 (+) | 471 | WP_000934764.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO27_RS13680 (QAO27_13680) | - | 2755510..2756394 (+) | 885 | WP_000148316.1 | DnaD domain protein | - |
| QAO27_RS13685 (QAO27_13685) | - | 2756401..2756619 (+) | 219 | WP_000338531.1 | hypothetical protein | - |
| QAO27_RS13690 (QAO27_13690) | - | 2756628..2756937 (+) | 310 | Protein_2655 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO27_RS13695 (QAO27_13695) | - | 2756950..2757318 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO27_RS13700 (QAO27_13700) | - | 2757322..2757564 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| QAO27_RS13705 (QAO27_13705) | - | 2757576..2757743 (+) | 168 | WP_001624242.1 | hypothetical protein | - |
| QAO27_RS13710 (QAO27_13710) | - | 2757736..2757987 (+) | 252 | WP_001065091.1 | DUF1024 family protein | - |
| QAO27_RS13715 (QAO27_13715) | - | 2757977..2758159 (+) | 183 | WP_000028422.1 | hypothetical protein | - |
| QAO27_RS13720 (QAO27_13720) | - | 2758152..2758694 (+) | 543 | WP_000185659.1 | dUTP diphosphatase | - |
| QAO27_RS13725 (QAO27_13725) | - | 2758731..2758937 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| QAO27_RS13730 (QAO27_13730) | - | 2758934..2759320 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| QAO27_RS13735 (QAO27_13735) | rinB | 2759317..2759466 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAO27_RS13740 (QAO27_13740) | - | 2759466..2759666 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QAO27_RS13745 (QAO27_13745) | - | 2759694..2760110 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAO27_RS13750 (QAO27_13750) | - | 2760342..2760641 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17627.49 Da Isoelectric Point: 5.2672
>NTDB_id=818451 QAO27_RS13675 WP_000934764.1 2755010..2755480(+) (ssbA) [Staphylococcus aureus strain MSSA-ATCC29213]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=818451 QAO27_RS13675 WP_000934764.1 2755010..2755480(+) (ssbA) [Staphylococcus aureus strain MSSA-ATCC29213]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |