Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QAY63_RS02420 Genome accession   NZ_CP123080
Coordinates   450188..451162 (+) Length   324 a.a.
NCBI ID   WP_041174216.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MRSA59     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445188..456162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY63_RS02385 (QAY63_02380) rpmG 445648..445797 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  QAY63_RS02390 (QAY63_02385) - 446006..446545 (+) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  QAY63_RS02395 (QAY63_02390) - 446557..448020 (+) 1464 WP_001017867.1 rhomboid family protein -
  QAY63_RS02400 (QAY63_02395) - 448001..448204 (+) 204 WP_000087561.1 YqgQ family protein -
  QAY63_RS02405 (QAY63_02400) - 448201..449187 (+) 987 WP_000161309.1 ROK family glucokinase -
  QAY63_RS02410 (QAY63_02405) - 449187..449516 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAY63_RS02415 (QAY63_02410) - 449513..450136 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAY63_RS02420 (QAY63_02415) comGA 450188..451162 (+) 975 WP_041174216.1 competence type IV pilus ATPase ComGA Machinery gene
  QAY63_RS02425 (QAY63_02420) comGB 451134..452204 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAY63_RS02430 (QAY63_02425) comGC 452218..452529 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAY63_RS02435 (QAY63_02430) comGD 452507..452953 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAY63_RS02440 (QAY63_02435) comGE 452940..453239 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  QAY63_RS02445 (QAY63_02440) comGF 453157..453654 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAY63_RS02450 (QAY63_02445) - 453751..453897 (+) 147 WP_001792109.1 hypothetical protein -
  QAY63_RS02455 (QAY63_02450) - 453887..454411 (+) 525 WP_001015120.1 shikimate kinase -
  QAY63_RS02460 (QAY63_02455) gcvT 454570..455661 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36924.98 Da        Isoelectric Point: 8.8516

>NTDB_id=818291 QAY63_RS02420 WP_041174216.1 450188..451162(+) (comGA) [Staphylococcus aureus strain SW-MRSA59]
MKILFQEIINKAIEMKANDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=818291 QAY63_RS02420 WP_041174216.1 450188..451162(+) (comGA) [Staphylococcus aureus strain SW-MRSA59]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAATGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997