Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO26_RS11520 | Genome accession | NZ_CP123077 |
| Coordinates | 2309829..2310332 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain SW-MRSA60 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2305769..2332122 | 2309829..2310332 | within | 0 |
Gene organization within MGE regions
Location: 2305769..2332122
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO26_RS11490 (QAO26_11490) | - | 2305769..2306614 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| QAO26_RS11495 (QAO26_11495) | - | 2306768..2307649 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| QAO26_RS11500 (QAO26_11500) | - | 2307679..2307882 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| QAO26_RS11505 (QAO26_11505) | ychF | 2307894..2308991 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| QAO26_RS11510 (QAO26_11510) | - | 2309077..2309268 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| QAO26_RS11515 (QAO26_11515) | rpsF | 2309512..2309808 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| QAO26_RS11520 (QAO26_11520) | ssbA | 2309829..2310332 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO26_RS11525 (QAO26_11525) | rpsR | 2310384..2310626 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| QAO26_RS11530 (QAO26_11530) | - | 2310858..2311577 (-) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAO26_RS11535 (QAO26_11535) | - | 2311690..2312904 (-) | 1215 | WP_000270135.1 | tyrosine-type recombinase/integrase | - |
| QAO26_RS11540 (QAO26_11540) | - | 2313065..2313688 (-) | 624 | WP_000230361.1 | helix-turn-helix domain-containing protein | - |
| QAO26_RS11545 (QAO26_11545) | - | 2313837..2314001 (+) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| QAO26_RS11550 (QAO26_11550) | - | 2314002..2314274 (+) | 273 | WP_031870322.1 | helix-turn-helix domain-containing protein | - |
| QAO26_RS11555 (QAO26_11555) | - | 2314286..2314459 (+) | 174 | WP_000784892.1 | hypothetical protein | - |
| QAO26_RS11560 (QAO26_11560) | - | 2314426..2314629 (+) | 204 | WP_001231376.1 | hypothetical protein | - |
| QAO26_RS11565 (QAO26_11565) | - | 2314631..2315014 (+) | 384 | WP_000403837.1 | hypothetical protein | - |
| QAO26_RS11570 (QAO26_11570) | tscT | 2315015..2315341 (+) | 327 | WP_001103967.1 | type II toxin-antitoxin system toxin TscT | - |
| QAO26_RS11575 (QAO26_11575) | - | 2315406..2316275 (+) | 870 | WP_031870360.1 | primase alpha helix C-terminal domain-containing protein | - |
| QAO26_RS11580 (QAO26_11580) | - | 2316287..2317657 (+) | 1371 | WP_000151864.1 | phage/plasmid primase, P4 family | - |
| QAO26_RS11585 (QAO26_11585) | - | 2317900..2318256 (+) | 357 | WP_001059599.1 | hypothetical protein | - |
| QAO26_RS11590 (QAO26_11590) | - | 2318249..2318521 (+) | 273 | WP_223297761.1 | hypothetical protein | - |
| QAO26_RS11595 (QAO26_11595) | - | 2318523..2319164 (+) | 642 | WP_031870361.1 | pathogenicity island protein | - |
| QAO26_RS11600 (QAO26_11600) | - | 2319872..2320216 (+) | 345 | WP_001288442.1 | hypothetical protein | - |
| QAO26_RS11605 (QAO26_11605) | - | 2320247..2320900 (+) | 654 | WP_000214170.1 | hypothetical protein | - |
| QAO26_RS11610 (QAO26_11610) | - | 2320953..2321480 (+) | 528 | WP_031870369.1 | spore coat protein | - |
| QAO26_RS11615 (QAO26_11615) | - | 2321612..2321824 (+) | 213 | WP_001656917.1 | hypothetical protein | - |
| QAO26_RS11620 (QAO26_11620) | - | 2321821..2322390 (+) | 570 | WP_001293071.1 | terminase small subunit | - |
| QAO26_RS11625 (QAO26_11630) | - | 2322667..2323635 (+) | 969 | WP_000801980.1 | Abi family protein | - |
| QAO26_RS11630 (QAO26_11635) | - | 2323813..2324214 (+) | 402 | WP_000683457.1 | hypothetical protein | - |
| QAO26_RS11635 (QAO26_11640) | - | 2324332..2324844 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| QAO26_RS11640 (QAO26_11645) | - | 2324860..2325039 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| QAO26_RS11645 (QAO26_11650) | - | 2325158..2326330 (+) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| QAO26_RS11650 (QAO26_11655) | - | 2327174..2328112 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| QAO26_RS11655 (QAO26_11660) | - | 2328151..2328864 (-) | 714 | Protein_2275 | tyrosine-type recombinase/integrase | - |
| QAO26_RS11660 (QAO26_11665) | selX | 2329070..2329681 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| QAO26_RS11665 (QAO26_11670) | - | 2330050..2330418 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| QAO26_RS11670 (QAO26_11675) | - | 2330599..2331171 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| QAO26_RS11675 (QAO26_11680) | - | 2331308..2331571 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| QAO26_RS11680 (QAO26_11685) | - | 2331871..2332122 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=818272 QAO26_RS11520 WP_000934799.1 2309829..2310332(+) (ssbA) [Staphylococcus aureus strain SW-MRSA60]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=818272 QAO26_RS11520 WP_000934799.1 2309829..2310332(+) (ssbA) [Staphylococcus aureus strain SW-MRSA60]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |