Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAY76_RS13495 | Genome accession | NZ_CP123072 |
| Coordinates | 2707078..2707548 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SW-MSSA62 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2670818..2712037 | 2707078..2707548 | within | 0 |
Gene organization within MGE regions
Location: 2670818..2712037
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAY76_RS13255 (QAY76_13250) | groES | 2670818..2671102 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAY76_RS13260 (QAY76_13255) | groL | 2671178..2672794 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| QAY76_RS13265 (QAY76_13260) | - | 2672863..2674035 (-) | 1173 | WP_031912621.1 | site-specific integrase | - |
| QAY76_RS13270 (QAY76_13265) | - | 2674045..2674668 (-) | 624 | WP_049949256.1 | helix-turn-helix domain-containing protein | - |
| QAY76_RS13275 (QAY76_13270) | - | 2674801..2675004 (+) | 204 | WP_411892996.1 | helix-turn-helix transcriptional regulator | - |
| QAY76_RS13280 (QAY76_13275) | - | 2675040..2675681 (+) | 642 | WP_031912618.1 | Bro-N domain-containing protein | - |
| QAY76_RS13285 (QAY76_13280) | - | 2675695..2676012 (+) | 318 | WP_031912617.1 | helix-turn-helix domain-containing protein | - |
| QAY76_RS13290 (QAY76_13285) | - | 2676009..2676155 (+) | 147 | WP_162852058.1 | hypothetical protein | - |
| QAY76_RS13295 (QAY76_13290) | tscA | 2676148..2676372 (+) | 225 | WP_031912616.1 | type II toxin-antitoxin system antitoxin TscA | - |
| QAY76_RS13300 (QAY76_13295) | tscT | 2676373..2676672 (+) | 300 | WP_001103961.1 | type II toxin-antitoxin system toxin TscT | - |
| QAY76_RS13305 (QAY76_13300) | - | 2676764..2679127 (+) | 2364 | WP_064137301.1 | phage/plasmid primase, P4 family | - |
| QAY76_RS13310 (QAY76_13305) | - | 2679548..2679892 (+) | 345 | WP_411892997.1 | pathogenicity island protein | - |
| QAY76_RS13315 (QAY76_13310) | - | 2680117..2680323 (+) | 207 | WP_047928558.1 | hypothetical protein | - |
| QAY76_RS13320 (QAY76_13315) | - | 2680310..2681368 (+) | 1059 | WP_047928557.1 | phage capsid protein | - |
| QAY76_RS13325 (QAY76_13320) | - | 2681644..2682039 (+) | 396 | WP_224738669.1 | pathogenicity island protein | - |
| QAY76_RS13330 | - | 2682042..2682183 (+) | 142 | Protein_2584 | terminase small subunit | - |
| QAY76_RS13335 (QAY76_13325) | - | 2682230..2682313 (+) | 84 | Protein_2585 | terminase small subunit | - |
| QAY76_RS13340 (QAY76_13330) | - | 2682460..2683428 (+) | 969 | WP_000801979.1 | Abi family protein | - |
| QAY76_RS13345 (QAY76_13335) | - | 2683653..2683847 (+) | 195 | WP_001834088.1 | hypothetical protein | - |
| QAY76_RS13350 (QAY76_13340) | - | 2683918..2684034 (+) | 117 | Protein_2588 | hypothetical protein | - |
| QAY76_RS13355 (QAY76_13345) | seb | 2684585..2685385 (+) | 801 | WP_031792985.1 | staphylococcal enterotoxin type B | - |
| QAY76_RS13360 (QAY76_13350) | - | 2685463..2686020 (-) | 558 | WP_001035619.1 | DUF4888 domain-containing protein | - |
| QAY76_RS13365 (QAY76_13355) | - | 2687661..2688968 (-) | 1308 | WP_001045078.1 | TrkH family potassium uptake protein | - |
| QAY76_RS13370 (QAY76_13360) | - | 2689129..2690040 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| QAY76_RS13375 (QAY76_13365) | - | 2690102..2690947 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| QAY76_RS13380 (QAY76_13370) | - | 2691319..2692542 (-) | 1224 | WP_411892998.1 | ArgE/DapE family deacylase | - |
| QAY76_RS13385 (QAY76_13375) | lukH | 2692977..2694032 (+) | 1056 | WP_031588767.1 | bi-component leukocidin LukGH subunit H | - |
| QAY76_RS13390 (QAY76_13380) | lukG | 2694054..2695070 (+) | 1017 | WP_000595394.1 | bi-component leukocidin LukGH subunit G | - |
| QAY76_RS13395 (QAY76_13385) | sph | 2695308..2696132 (-) | 825 | Protein_2597 | sphingomyelin phosphodiesterase | - |
| QAY76_RS13400 (QAY76_13390) | - | 2696189..2697226 (-) | 1038 | WP_411892999.1 | tyrosine-type recombinase/integrase | - |
| QAY76_RS13405 (QAY76_13395) | - | 2697334..2697948 (+) | 615 | WP_000191460.1 | hypothetical protein | - |
| QAY76_RS13410 (QAY76_13400) | - | 2697945..2698091 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| QAY76_RS13415 (QAY76_13405) | - | 2698127..2698309 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| QAY76_RS13420 (QAY76_13410) | - | 2698509..2699279 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| QAY76_RS13425 (QAY76_13415) | - | 2699438..2699662 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| QAY76_RS13430 (QAY76_13420) | - | 2699680..2699940 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| QAY76_RS13435 (QAY76_13425) | - | 2699964..2700503 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| QAY76_RS13440 (QAY76_13430) | - | 2700560..2701312 (+) | 753 | WP_024928163.1 | phage antirepressor KilAC domain-containing protein | - |
| QAY76_RS13445 (QAY76_13435) | - | 2701328..2701525 (+) | 198 | Protein_2607 | hypothetical protein | - |
| QAY76_RS13450 (QAY76_13440) | - | 2701556..2701696 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| QAY76_RS13455 (QAY76_13445) | - | 2701711..2702343 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| QAY76_RS13460 (QAY76_13450) | - | 2702402..2702722 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| QAY76_RS13465 (QAY76_13455) | - | 2702719..2702880 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| QAY76_RS13470 (QAY76_13460) | - | 2702973..2703233 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| QAY76_RS13475 (QAY76_13465) | - | 2703242..2703505 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAY76_RS13480 (QAY76_13470) | - | 2703514..2705457 (+) | 1944 | WP_000700557.1 | AAA family ATPase | - |
| QAY76_RS13485 (QAY76_13475) | - | 2705459..2706379 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| QAY76_RS13490 (QAY76_13480) | - | 2706460..2707077 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| QAY76_RS13495 (QAY76_13485) | ssbA | 2707078..2707548 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| QAY76_RS13500 (QAY76_13490) | - | 2707578..2708429 (+) | 852 | WP_046399783.1 | DnaD domain protein | - |
| QAY76_RS13505 (QAY76_13495) | - | 2708436..2708654 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAY76_RS13510 (QAY76_13500) | - | 2708663..2709067 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAY76_RS13515 (QAY76_13505) | - | 2709080..2709451 (+) | 372 | WP_031929144.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAY76_RS13520 (QAY76_13510) | - | 2709452..2709700 (+) | 249 | WP_001126836.1 | phi PVL orf 51-like protein | - |
| QAY76_RS13525 (QAY76_13515) | - | 2709765..2710214 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| QAY76_RS13530 (QAY76_13520) | - | 2710268..2710495 (+) | 228 | Protein_2624 | hypothetical protein | - |
| QAY76_RS13535 (QAY76_13525) | - | 2710488..2710742 (+) | 255 | WP_000370292.1 | DUF1024 family protein | - |
| QAY76_RS13540 (QAY76_13530) | - | 2710862..2711062 (+) | 201 | WP_000265042.1 | DUF1514 family protein | - |
| QAY76_RS13545 (QAY76_13535) | - | 2711090..2711506 (+) | 417 | WP_000590124.1 | hypothetical protein | - |
| QAY76_RS13550 (QAY76_13540) | - | 2711738..2712037 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=818193 QAY76_RS13495 WP_000934770.1 2707078..2707548(+) (ssbA) [Staphylococcus aureus strain SW-MSSA62]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=818193 QAY76_RS13495 WP_000934770.1 2707078..2707548(+) (ssbA) [Staphylococcus aureus strain SW-MSSA62]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |