Detailed information NTG0818086

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: R3L07_RS10340
• Genome accession: NZ_CP137073
• Coordinates: 2169895..2171013 (-)
• Length: 372 a.a.
• NCBI ID: WP_000347039.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain SNUBHAB0197
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2164895..2176013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3L07_RS10310 (R3L07_10320)	-	2165724..2166572 (+)	849	WP_000336548.1	class II glutamine amidotransferase	-
R3L07_RS10315 (R3L07_10325)	-	2166825..2167280 (+)	456	WP_000782976.1	bacteriohemerythrin	-
R3L07_RS10320 (R3L07_10330)	-	2167433..2168500 (+)	1068	WP_002019572.1	hypothetical protein	-
R3L07_RS10325 (R3L07_10335)	-	2168500..2168823 (+)	324	WP_000442587.1	RnfH family protein	-
R3L07_RS10330 (R3L07_10340)	-	2168878..2169276 (-)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
R3L07_RS10335 (R3L07_10345)	fur	2169388..2169825 (+)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
R3L07_RS10340 (R3L07_10350)	pilU	2169895..2171013 (-)	1119	WP_000347039.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
R3L07_RS10345 (R3L07_10355)	pilT	2171041..2172078 (-)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
R3L07_RS10350 (R3L07_10360)	-	2172205..2172897 (+)	693	WP_001108512.1	YggS family pyridoxal phosphate-dependent enzyme	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41933.13 Da
• Isoelectric Point: 6.6944

>NTDB_id=818086 R3L07_RS10340 WP_000347039.1 2169895..2171013(-) (pilU) [Acinetobacter baumannii strain SNUBHAB0197]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRREFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=818086 R3L07_RS10340 WP_000347039.1 2169895..2171013(-) (pilU) [Acinetobacter baumannii strain SNUBHAB0197]
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCTTCCGATCTCTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTTGTAGGCGCGACAG
GCACAGGTAAATCTACTTCACTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCTAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (31-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.926	100	0.772
pilU	Pseudomonas stutzeri DSM 10701	69.565	98.925	0.688
pilU	Vibrio cholerae strain A1552	53.243	99.462	0.53
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.486	93.011	0.395