Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QEP67_RS00090 Genome accession   NZ_CP123058
Coordinates   15174..15695 (+) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus cereus group sp. MS39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 10174..20695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS00060 (QEP67_00060) spo0J 10645..11496 (+) 852 WP_001051814.1 stage 0 sporulation protein Spo0J -
  QEP67_RS00065 (QEP67_00065) yyaC 11517..12113 (-) 597 WP_001020739.1 spore protease YyaC -
  QEP67_RS00070 (QEP67_00070) - 12374..13231 (+) 858 WP_000362298.1 mechanosensitive ion channel family protein -
  QEP67_RS00075 (QEP67_00075) - 13252..13449 (+) 198 WP_000436051.1 DUF951 domain-containing protein -
  QEP67_RS00080 (QEP67_00080) ychF 13565..14665 (+) 1101 WP_000524662.1 redox-regulated ATPase YchF -
  QEP67_RS00085 (QEP67_00085) rpsF 14857..15147 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  QEP67_RS00090 (QEP67_00090) ssbA 15174..15695 (+) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  QEP67_RS00095 (QEP67_00095) rpsR 15740..15973 (+) 234 WP_000918874.1 30S ribosomal protein S18 -
  QEP67_RS00100 (QEP67_00100) - 16054..16989 (+) 936 WP_000799153.1 YybS family protein -
  QEP67_RS00105 (QEP67_00105) - 17068..19041 (+) 1974 WP_001113891.1 DHH family phosphoesterase -
  QEP67_RS00110 (QEP67_00110) rplI 19038..19484 (+) 447 WP_000864225.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=818019 QEP67_RS00090 WP_000981963.1 15174..15695(+) (ssbA) [Bacillus cereus group sp. MS39]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=818019 QEP67_RS00090 WP_000981963.1 15174..15695(+) (ssbA) [Bacillus cereus group sp. MS39]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382